Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018954.1 Corchorus olitorius cultivar O-4 contig18987, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3310
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43


Found at i:93 original size:22 final size:22

Alignment explanation


    Indices: 51--159  Score: 164
    Period size: 22  Copynumber: 4.9  Consensus size: 22

         41 TGAAGTTGAA

                            *       
         51 GAAAATAATGCACTCTACAAAGTG
          1 GAAAATAATG--CTCTGCAAAGTG

               *                  
         75 GAAGATAATGCTCTGCAAAGTG
          1 GAAAATAATGCTCTGCAAAGTG

                                 *
         97 GAAAATAATGCTCTGCAAAGTA
          1 GAAAATAATGCTCTGCAAAGTG

                                  
        119 GAAAATAATGCTCTGCAAAGTG
          1 GAAAATAATGCTCTGCAAAGTG

             *                 
        141 GTAAATAATGCTCTGCAAA
          1 GAAAATAATGCTCTGCAAA

        160 AATGTTTCCA


Statistics
Matches: 79,  Mismatches: 6, Indels: 2
        0.91            0.07        0.02

Matches are distributed among these distances:
  22   70  0.89
  24    9  0.11

ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23


Consensus pattern (22 bp):   
GAAAATAATGCTCTGCAAAGTG

Done.