Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018955.1 Corchorus olitorius cultivar O-4 contig18988, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38


Found at i:1003 original size:22 final size:22

Alignment explanation


    Indices: 975--1126  Score: 151
    Period size: 22  Copynumber: 6.5  Consensus size: 22

        965 TGGAAACATT

                             *    
        975 TTTGCAGAGCATTATTTACCAC
          1 TTTGCAGAGCATTATTTTCCAC

                                  
        997 TTTGCAGAGCATTATTTTCCAC
          1 TTTGCAGAGCATTATTTTCCAC

                                  
       1019 TTTGCAGAGCATTATTTTCCAC
          1 TTTGCAGAGCATTATTTTCCAC

                                       
       1041 TTTGCAGAGTGCATTATTTTCTTCAAC
          1 TTTGCAGA--GCATTATTTTC--C-AC

               *  ***          ***    
       1068 TTCAGCTTTGCATTATTGGAAACATC
          1 TT-TGCAGAGCATTATT--TTCCA-C

                                  
       1094 TTTGCAGAGCATTATTTTCCAC
          1 TTTGCAGAGCATTATTTTCCAC

                       
       1116 TTTGCAGAGCA
          1 TTTGCAGAGCA

       1127 CTTCTTGTTG


Statistics
Matches: 106,  Mismatches: 15, Indels: 18
        0.76            0.11        0.13

Matches are distributed among these distances:
  22   63  0.59
  23    2  0.02
  24   11  0.10
  25   11  0.10
  26   13  0.12
  27    4  0.04
  28    2  0.02

ACGTcount: A:0.24, C:0.21, G:0.15, T:0.39


Consensus pattern (22 bp):   
TTTGCAGAGCATTATTTTCCAC

Done.