Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018957.1 Corchorus olitorius cultivar O-4 contig18990, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8747
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27


Found at i:5322 original size:16 final size:16

Alignment explanation


    Indices: 5301--5333  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       5291 AGATAGATTC

                            
       5301 GGGGTTGACGGGGCTG
          1 GGGGTTGACGGGGCTG

                   *        
       5317 GGGGTTGTCGGGGCTG
          1 GGGGTTGACGGGGCTG

             
       5333 G
          1 G

       5334 TTTGGTAGGG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.03, C:0.12, G:0.64, T:0.21


Consensus pattern (16 bp):   
GGGGTTGACGGGGCTG

Found at i:5782 original size:15 final size:15

Alignment explanation


    Indices: 5762--5792  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       5752 GTTAGAAAAA

                           
       5762 TGGAGAGCAAAATTT
          1 TGGAGAGCAAAATTT

                           
       5777 TGGAGAGCAAAATTT
          1 TGGAGAGCAAAATTT

             
       5792 T
          1 T

       5793 ATTGTTGAAA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.39, C:0.06, G:0.26, T:0.29


Consensus pattern (15 bp):   
TGGAGAGCAAAATTT
Done.