Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018958.1 Corchorus olitorius cultivar O-4 contig18991, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5623
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35


Found at i:4574 original size:39 final size:35

Alignment explanation


    Indices: 4487--4587  Score: 96
    Period size: 38  Copynumber: 2.7  Consensus size: 35

       4477 CCCTAAATTG

                                               
       4487 AAAAC-TAAAACTCAATGGGAACTTTCCAAATTTA
          1 AAAACTTAAAACTCAATGGGAACTTTCCAAATTTA

                            *              *          
       4521 AAAACTTTGAAAAACTGAATGGGAACTTTCCCAATTTGAAAA
          1 AAAAC-TT--AAAACTCAATGGGAACTTTCCAAATTT----A

                         *    *      
       4563 AAAACTTAAAACTTAATGAGAACTT
          1 AAAACTTAAAACTCAATGGGAACTT

       4588 AGAAAAGAAA


Statistics
Matches: 55,  Mismatches: 4, Indels: 11
        0.79            0.06        0.16

Matches are distributed among these distances:
  34    5  0.09
  36    1  0.02
  38   25  0.45
  39   16  0.29
  41    2  0.04
  42    6  0.11

ACGTcount: A:0.48, C:0.15, G:0.11, T:0.27


Consensus pattern (35 bp):   
AAAACTTAAAACTCAATGGGAACTTTCCAAATTTA
Done.