Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001896.1 Corchorus olitorius cultivar O-4 contig01896, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1771
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:81 original size:49 final size:47

Alignment explanation


    Indices: 4--110  Score: 144
    Period size: 49  Copynumber: 2.2  Consensus size: 47

          1 ACT

                      *          *              *            
          4 ACAAAATTGAACTTTTATTTTTACTTGCACCTTTTTCTCAATTTTTAAG
          1 ACAAAATTGATCTTTTATTTTCACTTGCA-CTTTTTATCAATTTTT-AG

                                                          * 
         53 ACAAAATTGATCTTTTAATTTTCA-TTGCACTTTTTATCAATTTTTTG
          1 ACAAAATTGATCTTTT-ATTTTCACTTGCACTTTTTATCAATTTTTAG

                       
        100 ACAAAATTGAT
          1 ACAAAATTGAT

        111 TGGCACGCTC


Statistics
Matches: 53,  Mismatches: 4, Indels: 4
        0.87            0.07        0.07

Matches are distributed among these distances:
  47   12  0.23
  48   15  0.28
  49   20  0.38
  50    6  0.11

ACGTcount: A:0.31, C:0.14, G:0.07, T:0.49


Consensus pattern (47 bp):   
ACAAAATTGATCTTTTATTTTCACTTGCACTTTTTATCAATTTTTAG
Done.