Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018961.1 Corchorus olitorius cultivar O-4 contig18994, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10756
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31


Found at i:8595 original size:15 final size:16

Alignment explanation


    Indices: 8575--8623  Score: 55
    Period size: 19  Copynumber: 2.9  Consensus size: 16

       8565 AAGAAAATTA

                            
       8575 AAGAAAACAATTAA-C
          1 AAGAAAACAATTAATC

                         *     
       8590 AAGAAAACAGTGAATAATC
          1 AAGAAAACA---ATTAATC

                           
       8609 AAGAAAACAATTAAT
          1 AAGAAAACAATTAAT

       8624 ATAAACCTCC


Statistics
Matches: 28,  Mismatches: 2, Indels: 7
        0.76            0.05        0.19

Matches are distributed among these distances:
  15    9  0.32
  16    5  0.18
  18    4  0.14
  19   10  0.36

ACGTcount: A:0.63, C:0.10, G:0.10, T:0.16


Consensus pattern (16 bp):   
AAGAAAACAATTAATC
Done.