Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018963.1 Corchorus olitorius cultivar O-4 contig18996, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69070

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4154--4198
3
14.7
3
84
13
56
66
0
28
4
1.11
4236--4329
35
2.7
35
84
0
134
15
42
37
4
1.67
4372--4421
6
8.3
6
95
0
91
34
48
16
2
1.57
5374--5442
28
2.5
28
77
11
70
27
18
14
39
1.90
15413--15450
16
2.4
16
86
8
51
2
15
0
81
0.80
16239--16278
15
2.7
15
96
3
73
0
20
0
80
0.72
22058--22098
21
1.9
22
90
5
66
46
12
21
19
1.82
23777--23804
12
2.3
12
100
0
56
67
10
10
10
1.42
23898--23971
27
2.7
28
89
2
105
36
27
17
18
1.94
24755--24794
13
3.4
12
87
12
57
80
5
10
5
1.02
25799--25831
17
1.9
17
100
0
66
12
9
6
72
1.26
26417--26492
29
2.7
28
83
4
82
38
34
13
14
1.85
28172--28220
2
24.5
2
95
0
89
48
2
0
48
1.12
52115--52275
54
3.0
54
91
0
259
24
16
21
37
1.93
52360--52619
109
2.4
108
82
4
301
28
17
21
32
1.96
52360--52619
54
4.8
54
78
4
229
28
17
21
32
1.96
52587--53320
35
20.9
35
88
2
1026
27
13
19
39
1.89
53292--53605
54
5.8
53
81
7
330
31
16
19
32
1.94
56593--56638
24
1.9
24
82
8
58
10
17
17
54
1.70
68788--68820
16
1.9
18
88
11
52
24
18
15
42
1.88
68884--69070
50
3.7
50
94
0
320
29
28
13
28
1.94

Tables:   1

The End!