Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018969.1 Corchorus olitorius cultivar O-4 contig19002, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87205

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3408--3507
50
2.0
50
100
0
200
30
18
30
22
1.97
14136--14160
11
2.3
11
100
0
50
8
0
28
64
1.22
16662--16714
22
2.4
22
83
0
70
16
7
11
64
1.48
41630--41679
23
2.1
24
92
3
84
78
16
4
2
1.00
41757--41929
92
1.9
90
82
10
215
45
21
8
24
1.79
41948--41977
8
3.6
8
95
4
51
86
10
3
0
0.67
42585--42614
16
1.9
16
93
6
53
23
0
6
70
1.11
45661--45728
29
2.3
28
82
9
82
17
8
8
64
1.47
45698--45741
23
1.9
23
90
9
72
27
15
13
43
1.85
46937--46962
11
2.4
11
100
0
52
69
7
15
7
1.35
49053--49119
31
2.2
31
86
5
93
50
11
16
20
1.76
52706--52752
12
3.6
13
77
8
51
55
12
0
31
1.38
53131--53205
28
2.7
28
77
2
80
40
16
21
22
1.91
54036--54090
28
1.9
28
85
3
74
38
12
16
32
1.86
54145--54185
15
2.7
16
81
11
59
4
14
0
80
0.87
55834--55894
31
2.0
29
90
6
95
55
18
6
19
1.63
68457--68541
29
2.8
30
83
3
100
25
18
15
40
1.90
70941--70987
22
2.1
22
88
0
67
2
31
6
59
1.34
71237--71413
87
2.0
87
96
0
327
34
8
19
37
1.82
73740--73803
29
2.3
27
84
10
76
26
25
3
45
1.68
73784--73813
11
2.6
12
94
5
53
33
20
6
40
1.78
77113--77174
29
2.1
30
90
6
99
37
19
6
37
1.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83647--83706
29
2.0
30
87
6
86
35
18
8
38
1.81

Tables:   1

The End!