Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018970.1 Corchorus olitorius cultivar O-4 contig19003, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9031
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:5572 original size:49 final size:50

Alignment explanation


    Indices: 5439--5585  Score: 181
    Period size: 49  Copynumber: 2.9  Consensus size: 50

       5429 CGAACTTTCC

                      *        *   *                           
       5439 CTAAATTGAAAAC-TAAAACCTGGTGGGAACTTTCCCAATTTGCAAAAGAG
          1 CTAAATTGAATACTTAAAAACTGATGGGAACTTTCCCAATTTG-AAAAGAG

               *         *  *                     *           *
       5489 CTAGATTGAATAGTTTGAAAACTGATGGGAACTTTCCCGATTTGAAAA-AT
          1 CTAAATTGAATA-CTTAAAAACTGATGGGAACTTTCCCAATTTGAAAAGAG

            *                                              
       5539 TTAAATTGAATACTTAAAAACTGATGGGAACTTTCCCAATTTGAAAA
          1 CTAAATTGAATACTTAAAAACTGATGGGAACTTTCCCAATTTGAAAA

       5586 CTTAAACCTG


Statistics
Matches: 82,  Mismatches: 13, Indels: 5
        0.82            0.13        0.05

Matches are distributed among these distances:
  49   32  0.39
  50   21  0.26
  51    4  0.05
  52   25  0.30

ACGTcount: A:0.39, C:0.14, G:0.17, T:0.29


Consensus pattern (50 bp):   
CTAAATTGAATACTTAAAAACTGATGGGAACTTTCCCAATTTGAAAAGAG
Done.