Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018973.1 Corchorus olitorius cultivar O-4 contig19006, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2143
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30


Found at i:1366 original size:31 final size:30

Alignment explanation


    Indices: 1331--1392  Score: 90
    Period size: 31  Copynumber: 2.0  Consensus size: 30

       1321 AACAGCCCAT

                                            
       1331 AAAGCCCAATACTAA-CTAAAATAAGAAAATA
          1 AAAGCCCAATACTAACCT-AAATAA-AAAATA

                  *                       
       1362 AAAGCCTAATACTAACCTAAATAAAAAATA
          1 AAAGCCCAATACTAACCTAAATAAAAAATA

             
       1392 A
          1 A

       1393 TGACAGAATA


Statistics
Matches: 29,  Mismatches: 1, Indels: 3
        0.88            0.03        0.09

Matches are distributed among these distances:
  30    7  0.24
  31   20  0.69
  32    2  0.07

ACGTcount: A:0.61, C:0.16, G:0.05, T:0.18


Consensus pattern (30 bp):   
AAAGCCCAATACTAACCTAAATAAAAAATA
Done.