Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018974.1 Corchorus olitorius cultivar O-4 contig19007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4855
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29


Found at i:335 original size:22 final size:23

Alignment explanation


    Indices: 307--349  Score: 79
    Period size: 22  Copynumber: 1.9  Consensus size: 23

        297 TAGAAGGATT

                                   
        307 AGGTTTTACT-TTCCTACCAGAA
          1 AGGTTTTACTATTCCTACCAGAA

                                 
        329 AGGTTTTACTATTCCTACCAG
          1 AGGTTTTACTATTCCTACCAG

        350 GATTAGGATT


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  22   10  0.50
  23   10  0.50

ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37


Consensus pattern (23 bp):   
AGGTTTTACTATTCCTACCAGAA

Done.