Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018977.1 Corchorus olitorius cultivar O-4 contig19010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65712

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
943--985
11
3.9
11
84
0
59
6
39
25
27
1.81
1189--1306
59
2.0
59
100
0
236
35
18
18
27
1.94
12738--12764
14
1.9
14
100
0
54
25
7
0
66
1.17
21704--22088
128
3.0
128
98
0
734
38
17
12
30
1.87
33985--34182
105
1.9
103
88
4
299
33
12
3
51
1.54
34141--34184
23
1.9
23
81
9
54
25
13
0
61
1.32
39812--39894
42
2.0
42
90
0
130
39
15
7
37
1.75
41158--41214
20
2.6
22
78
16
64
31
14
12
42
1.82
44300--44377
12
6.7
12
74
22
69
55
0
1
43
1.08
44825--44849
1
25.0
1
100
0
50
0
0
0
100
0.00
50385--50523
4
34.8
4
98
0
269
24
0
25
50
1.50
52035--52104
36
1.9
37
82
8
90
54
5
2
37
1.39
59379--59416
15
2.4
16
91
4
60
71
13
2
13
1.26
61993--62046
26
2.1
26
96
0
99
29
11
18
40
1.85
62232--62261
15
2.1
15
93
6
53
63
6
16
13
1.50

Tables:   1

The End!