Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018978.1 Corchorus olitorius cultivar O-4 contig19011, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 699

Length: 1165
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26


Found at i:416 original size:15 final size:15

Alignment explanation


    Indices: 396--437  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        386 ACAGAGGTTG

                           
        396 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                           
        411 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                  *     
        426 ACTAGACAACAA
          1 AC-AGAAAACAA

        438 AGCAAAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   17  0.68
  16    8  0.32

ACGTcount: A:0.64, C:0.17, G:0.07, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.