Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018979.1 Corchorus olitorius cultivar O-4 contig19012, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119310

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13414--13493
31
2.6
31
100
0
160
41
23
13
21
1.89
32382--32455
37
2.0
37
97
0
139
18
31
8
41
1.80
41941--41985
12
3.7
12
84
3
63
28
22
11
37
1.88
41941--41993
25
2.2
24
89
3
79
30
18
13
37
1.89
43778--43802
13
1.9
13
100
0
50
92
0
8
0
0.40
48428--48720
151
2.0
142
89
5
442
36
11
23
28
1.89
61418--61442
7
3.6
7
100
0
50
16
0
48
36
1.46
63934--63961
6
4.7
6
100
0
56
17
0
50
32
1.47
68591--68663
31
2.4
31
100
0
146
38
15
23
23
1.92
68958--68999
17
2.4
18
88
7
61
78
2
19
0
0.86
69458--69483
2
13.0
2
100
0
52
50
0
0
50
1.00
71223--71271
24
2.0
24
100
0
98
28
24
12
34
1.91
85720--85785
27
2.4
28
87
7
100
24
7
43
24
1.79
93888--93949
32
1.9
32
100
0
124
27
22
12
37
1.91
93915--94079
81
2.0
82
90
3
262
29
24
11
35
1.90
96605--96646
15
2.7
15
96
3
75
11
7
14
66
1.43
100693--100717
5
5.0
5
100
0
50
0
20
20
60
1.37
108464--108584
54
2.2
54
98
0
233
38
13
21
27
1.90
117941--118043
22
4.7
22
70
11
86
37
8
15
37
1.79
117987--118065
22
3.6
22
76
6
88
35
13
16
34
1.88
118151--118192
22
1.9
22
90
9
68
45
9
11
33
1.73
118282--118565
22
12.9
22
68
14
129
35
10
15
37
1.83

Tables:   1

The End!