Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018980.1 Corchorus olitorius cultivar O-4 contig19013, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36780

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1441--1771
178
1.9
178
96
2
612
43
13
9
32
1.77
2758--2952
99
2.0
99
95
0
354
52
8
9
29
1.63
2922--3055
67
2.0
67
97
0
250
55
8
15
20
1.67
5471--5495
6
4.2
6
100
0
50
48
16
20
16
1.82
5566--5597
7
4.6
7
100
0
64
43
12
28
15
1.83
5745--5771
4
6.8
4
100
0
54
25
25
0
48
1.52
7386--7412
8
3.4
8
100
0
54
88
0
11
0
0.50
12736--12762
6
4.5
6
100
0
54
33
14
33
18
1.92
15315--15339
6
4.2
6
100
0
50
64
0
20
16
1.30
17548--17580
10
3.3
10
91
0
57
87
0
12
0
0.53
23735--23774
19
2.0
20
90
4
64
52
2
15
30
1.55
25368--25408
11
3.8
11
87
3
57
60
14
14
9
1.57
28432--28483
24
2.2
24
96
0
95
42
3
15
38
1.65
30242--30282
21
2.0
21
85
0
55
31
26
9
31
1.89
30337--30381
21
2.2
20
92
4
72
22
26
17
33
1.96
30346--30393
21
2.3
21
88
0
69
20
27
16
35
1.94
31736--31987
126
2.0
126
94
0
441
30
22
12
34
1.91
35939--35977
16
2.4
16
87
8
53
66
12
10
10
1.44

Tables:   1

The End!