Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018981.1 Corchorus olitorius cultivar O-4 contig19014, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5653
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32


Found at i:2360 original size:21 final size:21

Alignment explanation


    Indices: 2317--2365  Score: 62
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       2307 GGCTTGGAAT

                             **  
       2317 GGTGATGGCACGGGCATGGCC
          1 GGTGATGGCACGGGCATAACC

                *          *     
       2338 GGTGGTGGCACGGGCTTAACC
          1 GGTGATGGCACGGGCATAACC

                   
       2359 GGTGATG
          1 GGTGATG

       2366 TGGCAATCGG


Statistics
Matches: 23,  Mismatches: 5, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  21   23  1.00

ACGTcount: A:0.14, C:0.20, G:0.47, T:0.18


Consensus pattern (21 bp):   
GGTGATGGCACGGGCATAACC
Done.