Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01018983.1 Corchorus olitorius cultivar O-4 contig19016, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3780
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32


Found at i:2513 original size:20 final size:19

Alignment explanation


    Indices: 2488--2538  Score: 57
    Period size: 20  Copynumber: 2.6  Consensus size: 19

       2478 GGAAAAAAAA

                          *     
       2488 CTAATTAAATTTAATTAAGT
          1 CTAATTAAATTTAACTAA-T

                      *         
       2508 CTAATTAAACCTTAACTAAT
          1 CTAATTAAA-TTTAACTAAT

                *      
       2528 CTAAATAAATT
          1 CTAATTAAATT

       2539 ATTAAATACT


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  19    1  0.04
  20   18  0.69
  21    7  0.27

ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39


Consensus pattern (19 bp):   
CTAATTAAATTTAACTAAT
Done.