genome.fa.s18987.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018987.1 Corchorus olitorius cultivar O-4 contig19020, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151408

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1281--1312	12	2.7	12	95	0	55	53	28	15	3	1.57
11439--11528	31	2.9	31	86	3	110	36	25	20	17	1.94
14255--14282	13	2.2	13	100	0	56	35	25	14	25	1.93
14290--14333	23	1.9	23	100	0	88	31	6	20	40	1.79
20987--21033	13	3.7	13	72	16	53	38	0	2	59	1.09
20993--21048	25	2.2	25	90	6	87	41	0	5	53	1.24
26032--26057	1	26.0	1	100	0	52	0	0	0	100	0.00
26488--26589	50	2.0	50	100	0	204	29	20	16	33	1.95
34484--34543	9	5.9	10	75	13	52	73	0	25	1	0.93
34480--34543	19	3.4	18	80	12	58	71	0	26	1	0.94
42575--42612	19	1.9	19	89	5	58	52	21	0	26	1.47
42871--42909	20	2.0	20	94	0	69	58	17	0	23	1.38
43094--43156	31	2.0	31	93	0	108	33	20	4	41	1.73
43193--43363	93	1.8	94	94	1	308	31	14	2	52	1.54
43794--43818	7	3.6	7	100	0	50	12	0	0	88	0.53
56543--56585	22	2.0	22	86	9	61	6	25	44	23	1.78
61729--61777	12	4.2	12	86	5	73	46	18	6	28	1.72
82703--82886	97	1.9	97	95	0	332	42	10	17	28	1.83
84967--85016	25	2.0	24	84	3	64	48	2	4	46	1.32
87948--87977	7	4.3	7	100	0	60	0	30	0	70	0.88
100872--100906	15	2.2	16	90	5	54	68	11	5	14	1.37
102310--102345	18	1.9	18	88	5	54	36	22	2	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112857--112900	18	2.5	17	85	10	61	6	86	0	6	0.71
114434--114486	22	2.4	22	78	9	54	39	1	1	56	1.21
115303--116287	44	22.3	43	67	15	261	37	8	16	37	1.80
115251--115646	22	18.1	22	70	11	199	36	9	17	37	1.82
115660--115808	22	7.0	22	74	5	90	35	10	18	36	1.84
115852--115936	26	3.4	26	67	15	72	43	8	11	36	1.71
116071--116283	22	9.8	22	69	16	133	36	8	16	38	1.80
116301--116387	22	3.9	22	81	11	81	35	4	19	40	1.72
116352--116403	22	2.3	23	83	12	72	46	5	15	32	1.70
116352--116412	22	2.8	21	82	9	68	44	6	18	31	1.75
119013--119147	43	3.1	43	100	0	270	37	15	4	42	1.67
119380--119415	17	2.1	17	89	0	54	30	11	19	38	1.86
120146--120374	116	2.0	116	97	0	431	31	26	14	27	1.95
121900--121973	30	2.5	30	97	0	139	24	29	28	17	1.97
121980--122039	18	3.3	18	76	0	66	20	26	25	28	1.99
128683--129102	183	2.3	181	89	1	633	21	29	16	32	1.95
141683--141712	15	1.9	16	93	6	53	53	10	23	13	1.69
145129--145163	11	3.2	11	83	0	52	77	17	5	0	0.96
146026--146117	32	2.9	32	86	1	132	15	10	34	39	1.82
146251--146289	20	2.0	20	85	10	53	35	5	5	53	1.45
147383--147412	15	2.0	15	100	0	60	40	0	20	40	1.52
148407--148931	200	2.6	199	87	3	761	32	18	13	35	1.90

Tables:   1

The End!