Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018991.1 Corchorus olitorius cultivar O-4 contig19024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65021

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6527--6584
19
2.9
19
87
5
80
29
22
12
36
1.90
10736--10766
13
2.4
13
100
0
62
41
0
35
22
1.54
11029--11055
2
13.5
2
100
0
54
48
0
0
51
1.00
11960--12198
4
61.5
4
69
14
135
25
7
0
66
1.20
11988--12123
19
6.5
20
68
27
79
25
8
0
65
1.21
11975--12275
8
37.1
8
68
14
91
25
9
0
63
1.31
11961--12201
44
5.5
44
92
3
337
26
7
0
66
1.20
11962--12192
15
15.9
14
67
18
82
26
7
0
65
1.22
18358--18421
30
2.2
28
81
13
69
45
4
0
50
1.22
19889--19930
22
1.9
22
90
0
66
40
7
9
42
1.65
19984--20035
22
2.4
22
83
3
70
42
7
11
38
1.70
20160--20701
22
24.7
22
68
15
128
38
9
15
36
1.80
20160--20613
44
10.3
43
69
14
184
37
9
16
36
1.82
20329--20396
27
2.7
27
84
8
81
38
7
17
36
1.78
20928--20966
2
20.0
2
94
5
71
48
0
0
51
1.00
21476--21858
178
2.2
178
84
3
504
36
15
14
33
1.88
35751--35938
92
2.0
93
91
1
306
27
21
17
33
1.96
38591--39288
22
31.0
22
68
13
251
36
11
15
36
1.84
38946--39219
73
3.9
73
85
6
343
35
12
15
36
1.85
39162--39303
66
2.1
66
83
3
169
33
11
14
39
1.83
40944--41204
106
2.5
104
91
2
407
40
9
8
40
1.70
46925--47054
68
2.0
65
86
4
179
34
14
20
30
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54434--54511
39
2.0
39
100
0
156
41
15
12
30
1.85
54705--54731
7
3.9
7
100
0
54
14
29
25
29
1.95
54840--54891
6
8.3
6
91
4
77
82
17
0
0
0.66
54836--54897
19
3.3
19
84
10
76
80
19
0
0
0.71
58044--58113
22
3.2
22
87
2
97
41
12
5
40
1.67
58040--58143
43
2.4
44
83
1
129
40
12
9
37
1.76
64326--64629
40
7.9
41
76
16
212
37
15
15
30
1.89
64353--64507
82
1.9
81
84
8
204
40
15
15
28
1.88
64489--64618
37
3.8
32
83
10
102
33
16
15
34
1.90
64511--64615
37
2.8
38
88
5
167
32
16
16
35
1.91
64510--64629
37
3.1
38
84
8
163
36
15
15
33
1.88

Tables:   1

The End!