genome.fa.s18995.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018995.1 Corchorus olitorius cultivar O-4 contig19028, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38096

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1872--1897	4	6.5	4	100	0	52	76	0	0	23	0.78
13910--13946	19	2.0	19	89	5	58	64	0	0	35	0.94
14638--14892	132	1.9	132	86	6	365	50	1	10	37	1.44
16774--16821	20	2.3	20	85	3	60	54	16	6	22	1.65
20706--20783	35	2.2	35	86	2	102	46	19	6	28	1.74
20724--20794	35	2.0	35	100	0	142	42	16	7	33	1.76
22389--22435	20	2.3	21	82	10	62	74	2	6	17	1.12
33636--33660	7	3.6	7	100	0	50	40	0	16	44	1.47
35051--35135	2	48.5	2	70	25	68	54	0	1	44	1.07
35049--35139	12	7.2	13	80	16	102	53	0	1	45	1.07
35769--35956	57	3.3	56	87	3	243	26	12	20	40	1.88
35770--36076	57	5.2	55	74	17	240	25	12	21	41	1.87
35922--35980	21	2.9	19	82	10	64	18	13	25	42	1.87
35943--36087	54	2.7	53	81	10	152	23	11	22	42	1.86
36100--36273	55	3.2	55	84	3	181	24	13	18	42	1.87
36131--36273	55	2.6	56	86	2	189	23	14	21	40	1.90
35839--36216	128	2.9	128	81	2	432	24	13	19	42	1.87
36258--36315	21	2.8	20	92	5	89	18	15	25	39	1.91
36203--36389	95	1.9	97	90	4	297	21	14	25	37	1.92
36714--36760	22	2.1	23	88	4	69	27	48	21	2	1.61
36782--36848	6	11.0	6	73	20	59	32	47	19	0	1.50
36787--36849	16	3.9	16	79	10	65	34	46	19	0	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37073--37148	35	2.2	35	90	4	118	55	9	14	21	1.67

Tables:   1

The End!