Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018997.1 Corchorus olitorius cultivar O-4 contig19030, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28589

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
510--538
13
2.3
13
94
5
51
0
10
0
89
0.48
2094--2889
40
20.4
38
76
12
171
37
11
20
30
1.88
2238--2344
41
2.7
40
80
9
137
39
12
20
28
1.88
2238--2813
40
14.5
41
82
7
194
38
11
20
30
1.87
2101--2368
147
1.8
149
88
3
416
38
11
20
30
1.88
2238--2847
80
7.7
80
82
6
595
37
11
21
29
1.88
2319--2813
120
4.2
119
87
5
696
37
10
20
30
1.87
2786--2889
39
2.8
37
76
2
109
37
12
23
26
1.90
2952--3265
140
2.2
142
92
2
508
33
15
21
29
1.94
4253--4294
16
2.8
16
85
7
61
0
4
11
83
0.79
10526--10590
10
6.1
11
76
15
57
0
16
3
80
0.85
10526--10588
15
4.1
16
71
16
53
0
15
3
80
0.83
10532--10584
21
2.5
21
82
11
63
0
16
3
79
0.88
15077--15199
61
2.0
61
98
0
237
30
11
20
38
1.88
17259--17327
5
14.4
5
83
13
92
0
0
17
82
0.67
17264--17324
13
4.5
13
91
8
88
0
0
16
83
0.64
22130--22168
2
20.5
2
89
10
64
51
0
0
48
1.00
24751--25160
204
2.0
201
96
1
748
43
7
11
36
1.70

Tables:   1

The End!