Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01018998.1 Corchorus olitorius cultivar O-4 contig19031, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30605

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
458--495
2
19.5
2
84
15
53
47
0
2
50
1.15
458--495
11
3.5
11
82
13
51
47
0
2
50
1.15
11459--11496
17
2.2
18
90
4
60
13
15
21
50
1.78
12947--12985
18
2.1
19
90
4
62
41
15
17
25
1.89
15306--15330
13
1.9
13
100
0
50
40
12
24
24
1.88
17756--17856
51
2.0
51
92
0
166
47
5
15
30
1.70
21364--21447
34
2.5
34
92
0
141
20
17
19
42
1.89
29863--29899
8
4.6
8
87
12
58
89
0
10
0
0.49
29862--29913
23
2.2
24
89
3
79
84
0
15
0
0.62
29865--29914
14
3.4
14
84
10
64
82
0
18
0
0.68
29861--29906
17
2.8
16
90
6
65
84
0
15
0
0.62
29862--29939
30
2.6
29
78
10
84
82
1
12
3
0.88
29923--29947
9
2.8
9
100
0
50
88
0
0
12
0.53
29860--29958
17
5.6
17
70
22
55
79
1
14
5
0.94

Tables:   1

The End!