Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019000.1 Corchorus olitorius cultivar O-4 contig19033, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 136066
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Found at i:3269 original size:19 final size:19
Alignment explanation
Indices: 3245--3282 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
3235 AAATCGAGTT
3245 TTCAAAAACCCAAAAAAAA
1 TTCAAAAACCCAAAAAAAA
*
3264 TTCAAAAACTCAAAAAAAA
1 TTCAAAAACCCAAAAAAAA
3283 AACCAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.68, C:0.18, G:0.00, T:0.13
Consensus pattern (19 bp):
TTCAAAAACCCAAAAAAAA
Found at i:3285 original size:13 final size:12
Alignment explanation
Indices: 3267--3296 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
3257 AAAAAAATTC
3267 AAAAACTCAAAAA
1 AAAAAC-CAAAAA
3280 AAAAACCAAAAA
1 AAAAACCAAAAA
3292 AAAAA
1 AAAAA
3297 GAAATTTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.83, C:0.13, G:0.00, T:0.03
Consensus pattern (12 bp):
AAAAACCAAAAA
Found at i:3290 original size:19 final size:19
Alignment explanation
Indices: 3247--3291 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
3237 ATCGAGTTTT
**
3247 CAAAAACCCAAAAAAAATT
1 CAAAAACCCAAAAAAAAAA
*
3266 CAAAAACTCAAAAAAAAAA
1 CAAAAACCCAAAAAAAAAA
3285 CCAAAAA
1 -CAAAAA
3292 AAAAAGAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.73, C:0.20, G:0.00, T:0.07
Consensus pattern (19 bp):
CAAAAACCCAAAAAAAAAA
Found at i:3401 original size:37 final size:35
Alignment explanation
Indices: 3313--3451 Score: 122
Period size: 35 Copynumber: 3.9 Consensus size: 35
3303 TCATCAACTT
* * * *
3313 AGTTTTCAAATTGAGAAAATTCCTACCAGTTTTTA
1 AGTTTTCAAATTGGGAAAATTCCCATCAGTTTTAA
**
3348 AGTTTTCAAACCGGGAAAATTCCCATTCAGTTTTCAA
1 AGTTTTCAAATTGGGAAAATTCCCA-TCAGTTTT-AA
* *
3385 AGTTTTAAAATTGGGAAAGTTCCCATCAGATTTT--
1 AGTTTTCAAATTGGGAAAATTCCCATCAG-TTTTAA
* * *
3419 AGTTTTCAATTTAGGGAAAGTTCCCGTCA-TTTT
1 AGTTTTCAAATT-GGGAAAATTCCCATCAGTTTT
3452 CAGTTTTAGT
Statistics
Matches: 87, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
33 4 0.05
34 10 0.11
35 36 0.41
36 11 0.13
37 26 0.30
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (35 bp):
AGTTTTCAAATTGGGAAAATTCCCATCAGTTTTAA
Found at i:5470 original size:20 final size:21
Alignment explanation
Indices: 5445--5487 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
5435 ATGGAATTAA
*
5445 ATATCCGTCGATA-CTTCGAT
1 ATATCCGTCGATATATTCGAT
5465 ATATCCGTCGATATATTCGAT
1 ATATCCGTCGATATATTCGAT
5486 AT
1 AT
5488 TTGTACCCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATCCGTCGATATATTCGAT
Found at i:5610 original size:10 final size:10
Alignment explanation
Indices: 5595--5640 Score: 74
Period size: 10 Copynumber: 4.6 Consensus size: 10
5585 TATTCTCGAT
5595 ATATCCGTAA
1 ATATCCGTAA
5605 ATATCCGTAA
1 ATATCCGTAA
*
5615 GTATCCGTAA
1 ATATCCGTAA
*
5625 ATATTCGTAA
1 ATATCCGTAA
5635 ATATCC
1 ATATCC
5641 ATATTAAATC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (10 bp):
ATATCCGTAA
Found at i:8183 original size:31 final size:31
Alignment explanation
Indices: 8142--8203 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
8132 ATCCAAACAG
*
8142 GGGGGGTCAATTTTTCGGTGCTAGGGTTTTT
1 GGGGGCTCAATTTTTCGGTGCTAGGGTTTTT
8173 GGGGGCTCAATTTTTCGGTGCTAGGGTTTTT
1 GGGGGCTCAATTTTTCGGTGCTAGGGTTTTT
8204 AAGGCTTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.10, C:0.11, G:0.37, T:0.42
Consensus pattern (31 bp):
GGGGGCTCAATTTTTCGGTGCTAGGGTTTTT
Found at i:8202 original size:16 final size:16
Alignment explanation
Indices: 8152--8203 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
8142 GGGGGGTCAA
8152 TTTTTCGGTGCTAGGG
1 TTTTTCGGTGCTAGGG
* * *
8168 TTTTTGGGGGCTCA--A
1 TTTTTCGGTGCT-AGGG
8183 TTTTTCGGTGCTAGGG
1 TTTTTCGGTGCTAGGG
8199 TTTTT
1 TTTTT
8204 AAGGCTTAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 6
0.69 0.15 0.15
Matches are distributed among these distances:
14 1 0.04
15 10 0.37
16 15 0.56
17 1 0.04
ACGTcount: A:0.08, C:0.12, G:0.33, T:0.48
Consensus pattern (16 bp):
TTTTTCGGTGCTAGGG
Found at i:9908 original size:33 final size:35
Alignment explanation
Indices: 9863--9955 Score: 127
Period size: 33 Copynumber: 2.7 Consensus size: 35
9853 AGTCTTCGAA
* *
9863 GTTTTCAAATTGGGAAAGTTCCCACCAGGTTTTA-
1 GTTTTAAAATTGGGAAAGTTCCCACAAGGTTTTAG
* *
9897 GTTTT-TAATTGGGAAAGTTCCCAACAAGTTTTTAG
1 GTTTTAAAATTGGGAAAGTTCCC-ACAAGGTTTTAG
9932 GTTTTAAAATTGGGAAAGTTCCCA
1 GTTTTAAAATTGGGAAAGTTCCCA
9956 TTCAGTTTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
33 16 0.31
34 14 0.27
35 6 0.12
36 16 0.31
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (35 bp):
GTTTTAAAATTGGGAAAGTTCCCACAAGGTTTTAG
Found at i:9950 original size:36 final size:34
Alignment explanation
Indices: 9862--9955 Score: 127
Period size: 36 Copynumber: 2.7 Consensus size: 34
9852 CAGTCTTCGA
*
9862 AGTTTTCAAATTGGGAAAGTTCCC-ACCAGGTTTT
1 AGTTTT-AAATTGGGAAAGTTCCCAACAAGGTTTT
* *
9896 AGTTTTTAATTGGGAAAGTTCCCAACAAGTTTTT
1 AGTTTTAAATTGGGAAAGTTCCCAACAAGGTTTT
9930 AGGTTTTAAAATTGGGAAAGTTCCCA
1 A-GTTTT-AAATTGGGAAAGTTCCCA
9956 TTCAGTTTCT
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
33 16 0.30
34 15 0.28
35 5 0.09
36 17 0.32
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (34 bp):
AGTTTTAAATTGGGAAAGTTCCCAACAAGGTTTT
Found at i:10971 original size:12 final size:13
Alignment explanation
Indices: 10954--10988 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
10944 CGATATCTCA
*
10954 ATATATCTAT-CG
1 ATATATCCATCCG
10966 ATATATCCATCCG
1 ATATATCCATCCG
10979 ATATATCCAT
1 ATATATCCAT
10989 GGATACCTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 9 0.43
13 12 0.57
ACGTcount: A:0.34, C:0.23, G:0.06, T:0.37
Consensus pattern (13 bp):
ATATATCCATCCG
Found at i:10982 original size:13 final size:12
Alignment explanation
Indices: 10954--10993 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
10944 CGATATCTCA
*
10954 ATATATCTATCG
1 ATATATCCATCG
10966 ATATATCCATCCG
1 ATATATCCAT-CG
*
10979 ATATATCCATGG
1 ATATATCCATCG
10991 ATA
1 ATA
10994 CCTGTATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (12 bp):
ATATATCCATCG
Found at i:14646 original size:26 final size:26
Alignment explanation
Indices: 14598--14649 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14588 AAAATAGACA
*
14598 AATTAAACTAGAAACCAATAAAATAG
1 AATTAAACTAGAAACCAAGAAAATAG
**
14624 AATTAAACTAGAAATTAAGAAAATAG
1 AATTAAACTAGAAACCAAGAAAATAG
14650 TTTGAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.62, C:0.08, G:0.10, T:0.21
Consensus pattern (26 bp):
AATTAAACTAGAAACCAAGAAAATAG
Found at i:16061 original size:76 final size:76
Alignment explanation
Indices: 15924--16075 Score: 168
Period size: 76 Copynumber: 2.0 Consensus size: 76
15914 ACAAGGGCCC
* * *
15924 CGACTCCACCTGGGTGCCCACATGGTTGCCTTGAGTACCCATGTGGTTTGCTTGAGGACCCAGGT
1 CGACTCCACCTGGGTGCCCACATGGTTGCCTTGAGTACCCATGTGGTTTGCCTGAGCACCCAGAT
15989 GGGCA-GTGTCA
66 GGG-ATGTGTCA
* * * * *
16000 CGACTCCAGCTGGGTGCCGATATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
1 CGACTCCACCTGGGTGCCCACATGG-TTGCCTTG-AGTACCCATGTGGTTT-GCCTGAGCACCCA
16062 GATGGGATGTGTCA
63 GATGGGATGTGTCA
16076 TAACTCATCA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
75 5 0.08
76 53 0.83
77 6 0.09
ACGTcount: A:0.17, C:0.26, G:0.30, T:0.26
Consensus pattern (76 bp):
CGACTCCACCTGGGTGCCCACATGGTTGCCTTGAGTACCCATGTGGTTTGCCTGAGCACCCAGAT
GGGATGTGTCA
Found at i:17057 original size:28 final size:28
Alignment explanation
Indices: 17000--17057 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
16990 ATGATTTAGG
* * **
17000 GGTTACTAACTCCCTTTTTTTCTTTTGA
1 GGTTACTAACACCATTTTTTTCTTCAGA
17028 GGTTACTAACACTCATTTTTTT-TTCAGA
1 GGTTACTAACAC-CATTTTTTTCTTCAGA
17056 GG
1 GG
17058 GACAATACTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
28 17 0.68
29 8 0.32
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (28 bp):
GGTTACTAACACCATTTTTTTCTTCAGA
Found at i:18619 original size:28 final size:27
Alignment explanation
Indices: 18588--18661 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 27
18578 TTCAAAATGC
*
18588 AGGGGCATTTTGGTCATTTGCATATTCA
1 AGGGGCATTTTGGTCATTTGCA-AGTCA
* * * *
18616 A-GGGTATTTTAGTCATTTTGCACGTCC
1 AGGGGCATTTTGGTCA-TTTGCAAGTCA
18643 AGGGGCATTTTGGTCATTT
1 AGGGGCATTTTGGTCATTT
18662 CTACTCCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
27 18 0.49
28 19 0.51
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.41
Consensus pattern (27 bp):
AGGGGCATTTTGGTCATTTGCAAGTCA
Found at i:24117 original size:21 final size:22
Alignment explanation
Indices: 24081--24121 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
24071 AATTTCTGAT
*
24081 TCGACCTCCTTGAAGGTTGACG
1 TCGACCTCCATGAAGGTTGACG
24103 TCGACC-CCATGAAGGTTGA
1 TCGACCTCCATGAAGGTTGA
24122 AACAGAATCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (22 bp):
TCGACCTCCATGAAGGTTGACG
Found at i:25940 original size:26 final size:26
Alignment explanation
Indices: 25892--25943 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
25882 AAAATAGACA
*
25892 AATTAAACTAGAAACCAATAAAATAG
1 AATTAAACTAGAAACCAAGAAAATAG
* **
25918 AATTAAACTAGAGATTAAGAAAATAG
1 AATTAAACTAGAAACCAAGAAAATAG
25944 TTTGAGAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.60, C:0.08, G:0.12, T:0.21
Consensus pattern (26 bp):
AATTAAACTAGAAACCAAGAAAATAG
Found at i:27355 original size:76 final size:76
Alignment explanation
Indices: 27218--27369 Score: 175
Period size: 76 Copynumber: 2.0 Consensus size: 76
27208 ACAAGGGCCC
* * *
27218 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGGACCCAGGT
1 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGCACCCAGAT
27283 GGGCAGTGTCA
66 GGGCAGTGTCA
* * * * *
27294 CGACTTCAGCTGGGTGCCCACATGGTTTGTC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
1 CGACTCCACCTGGGCGCCCACATGG-TTGCCTTG-AGCACCCATGTGGTTT-GCCTGAGCACCCA
*
27356 GATGGGCTGTGTCA
63 GATGGGCAGTGTCA
27370 TAGCTCATCA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
75 4 0.06
76 54 0.84
77 6 0.09
ACGTcount: A:0.16, C:0.29, G:0.30, T:0.25
Consensus pattern (76 bp):
CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCCTGAGCACCCAGAT
GGGCAGTGTCA
Found at i:27429 original size:25 final size:25
Alignment explanation
Indices: 27391--27454 Score: 121
Period size: 25 Copynumber: 2.6 Consensus size: 25
27381 CTTGACATGT
27391 CTTC-TTGCCTTGAACTTGTCTTTG
1 CTTCTTTGCCTTGAACTTGTCTTTG
27415 CTTCTTTGCCTTGAACTTGTCTTTG
1 CTTCTTTGCCTTGAACTTGTCTTTG
27440 CTTCTTTGCCTTGAA
1 CTTCTTTGCCTTGAA
27455 AACACCAAAC
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
24 4 0.10
25 35 0.90
ACGTcount: A:0.09, C:0.25, G:0.16, T:0.50
Consensus pattern (25 bp):
CTTCTTTGCCTTGAACTTGTCTTTG
Found at i:28594 original size:5 final size:6
Alignment explanation
Indices: 28579--28603 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
28569 TCGTGTATTA
28579 TTTTTC TTTTTC TTTTTC TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC T
28604 ATTTGATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTC
Found at i:30407 original size:15 final size:15
Alignment explanation
Indices: 30377--30418 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
30367 TTACTCTGCT
30377 TTGTTTTCTAGTTTAA
1 TTGTTTTCT-GTTTAA
30393 TTGTTTTCTGTTTAA
1 TTGTTTTCTGTTTAA
*
30408 TTGCTTTCTGT
1 TTGTTTTCTGT
30419 CAATCTCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.12, C:0.10, G:0.14, T:0.64
Consensus pattern (15 bp):
TTGTTTTCTGTTTAA
Found at i:33401 original size:21 final size:21
Alignment explanation
Indices: 33375--33429 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
33365 CGGCCATTCA
**
33375 CCGTGCCACCACCGGTTAAGC
1 CCGTGCCACCACCGGCCAAGC
*
33396 CCGTGCCACCACCGGCCATGC
1 CCGTGCCACCACCGGCCAAGC
*
33417 CCGTGCCATCACC
1 CCGTGCCACCACC
33430 ATTCCAAGCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.49, G:0.22, T:0.13
Consensus pattern (21 bp):
CCGTGCCACCACCGGCCAAGC
Found at i:33807 original size:14 final size:15
Alignment explanation
Indices: 33781--33810 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33771 ATCTTTCTAA
33781 TTTTCCTTGCATTAT
1 TTTTCCTTGCATTAT
33796 TTTTCCTT-CATTAT
1 TTTTCCTTGCATTAT
33810 T
1 T
33811 GCTTTGATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.13, C:0.20, G:0.03, T:0.63
Consensus pattern (15 bp):
TTTTCCTTGCATTAT
Found at i:37663 original size:15 final size:15
Alignment explanation
Indices: 37633--37674 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
37623 TTACTCTGCT
37633 TTGTTTTCTAGTTTAA
1 TTGTTTTCT-GTTTAA
37649 TTGTTTTCTGTTTAA
1 TTGTTTTCTGTTTAA
*
37664 TTGCTTTCTGT
1 TTGTTTTCTGT
37675 CAATCTCTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.12, C:0.10, G:0.14, T:0.64
Consensus pattern (15 bp):
TTGTTTTCTGTTTAA
Found at i:45602 original size:29 final size:26
Alignment explanation
Indices: 45569--45629 Score: 79
Period size: 25 Copynumber: 2.3 Consensus size: 26
45559 AAATTAAAGA
*
45569 CAGAAAATAAAAGAAAATATTTTATGACG
1 CAGAAAACAAAA-AAAA-A-TTTATGACG
45598 CAG-AAACAAAAAAAAATTTATGACG
1 CAGAAAACAAAAAAAAATTTATGACG
45623 CAGAAAA
1 CAGAAAA
45630 ACTTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 12 0.40
26 4 0.13
27 4 0.13
28 7 0.23
29 3 0.10
ACGTcount: A:0.59, C:0.10, G:0.13, T:0.18
Consensus pattern (26 bp):
CAGAAAACAAAAAAAAATTTATGACG
Found at i:45704 original size:19 final size:20
Alignment explanation
Indices: 45670--45708 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
45660 TTTTTTCTTC
45670 AAAAACACAAACACAAAATT
1 AAAAACACAAACACAAAATT
*
45690 AAAAACGCAAA-ACAAAATT
1 AAAAACACAAACACAAAATT
45709 TTTTTTTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.69, C:0.18, G:0.03, T:0.10
Consensus pattern (20 bp):
AAAAACACAAACACAAAATT
Found at i:53011 original size:18 final size:18
Alignment explanation
Indices: 52978--53014 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
52968 GTGAAGACTT
52978 ATTTAAGATAATTTGAAG
1 ATTTAAGATAATTTGAAG
52996 ATTTGAAGATAA-TTGAAG
1 ATTT-AAGATAATTTGAAG
53014 A
1 A
53015 ATTATTTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (18 bp):
ATTTAAGATAATTTGAAG
Found at i:53026 original size:22 final size:21
Alignment explanation
Indices: 52969--53026 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 21
52959 AGTTCGTGTG
52969 TGAAGACTTATTTAAGATAATT
1 TGAAGA-TTATTTAAGATAATT
*
52991 TGAAGA-T-TTGAAGATAA-T
1 TGAAGATTATTTAAGATAATT
53009 TGAAGAATTATTTCAAGA
1 TGAAG-ATTATTT-AAGA
53027 AGCAAGAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
18 6 0.20
19 10 0.33
20 2 0.07
21 2 0.07
22 10 0.33
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.36
Consensus pattern (21 bp):
TGAAGATTATTTAAGATAATT
Found at i:62230 original size:60 final size:59
Alignment explanation
Indices: 62138--62302 Score: 226
Period size: 60 Copynumber: 2.7 Consensus size: 59
62128 AGCCGACTAA
* *
62138 TTGCTCAAATAAGGGCCTAGTGTT-TGCCAAAATGCTCAAATAAGGACCCGATCTTTTAATT
1 TTGC-CAAATAAGGGCCTAATGTTAT-CAAAAATGCTCAAATAAGGACCCGATCTTTTAA-T
* * *
62199 TTGCCAAATAAGGGCCTAACGTTATCAAAAATGCTCAAATAAGGGCCTGATCTTTTAAT
1 TTGCCAAATAAGGGCCTAATGTTATCAAAAATGCTCAAATAAGGACCCGATCTTTTAAT
62258 TTGACCAAATAAGGGTCC-AATGTTATCAAAAATGCTCAAATAAGG
1 TTG-CCAAATAAGGG-CCTAATGTTATCAAAAATGCTCAAATAAGG
62303 GCATGGCGTC
Statistics
Matches: 95, Mismatches: 6, Indels: 7
0.88 0.06 0.06
Matches are distributed among these distances:
59 4 0.04
60 84 0.88
61 7 0.07
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (59 bp):
TTGCCAAATAAGGGCCTAATGTTATCAAAAATGCTCAAATAAGGACCCGATCTTTTAAT
Found at i:62241 original size:31 final size:31
Alignment explanation
Indices: 62203--62304 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
62193 TTAATTTTGC
62203 CAAATAAGGGCCTAACGTTATCAAAAATGCT
1 CAAATAAGGGCCTAACGTTATCAAAAATGCT
* * **
62234 CAAATAAGGGCCTGATC-TT-T-TAATTTGAC-
1 CAAATAAGGGCCT-AACGTTATCAAAAATG-CT
*
62263 CAAATAAGGGTCC-AATGTTATCAAAAATGCT
1 CAAATAAGGG-CCTAACGTTATCAAAAATGCT
62294 CAAATAAGGGC
1 CAAATAAGGGC
62305 ATGGCGTCAT
Statistics
Matches: 55, Mismatches: 9, Indels: 15
0.70 0.11 0.19
Matches are distributed among these distances:
28 1 0.02
29 16 0.29
30 7 0.13
31 29 0.53
32 2 0.04
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (31 bp):
CAAATAAGGGCCTAACGTTATCAAAAATGCT
Found at i:62451 original size:60 final size:60
Alignment explanation
Indices: 62347--62505 Score: 203
Period size: 60 Copynumber: 2.6 Consensus size: 60
62337 TTCGACACCA
* *
62347 GACCCTTATTTGAGCATTTTCGATAACATTGGGCCCTTATTTGGCCAAATTAAAAGACCG
1 GACCCTTATTTGAGCATTTTCGATAACATTAGGCCCTTACTTGGCCAAATTAAAAGACCG
* *** * *
62407 GGCCCTTATTTGAGCATTTTCGATAGTGTTAGGCCTTTACTTGGCCAAATTAAAAGATCG
1 GACCCTTATTTGAGCATTTTCGATAACATTAGGCCCTTACTTGGCCAAATTAAAAGACCG
* * *
62467 GACCGTTATTTGAGCATTTTGGCA-AACGTTAGGCCCTTA
1 GACCCTTATTTGAGCATTTTCG-ATAACATTAGGCCCTTA
62506 TTTGAACAAT
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
60 83 0.99
61 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (60 bp):
GACCCTTATTTGAGCATTTTCGATAACATTAGGCCCTTACTTGGCCAAATTAAAAGACCG
Found at i:66356 original size:11 final size:11
Alignment explanation
Indices: 66340--66365 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
66330 AGATAATTTC
66340 TTTTCTTCTAG
1 TTTTCTTCTAG
66351 TTTTCTTCTAG
1 TTTTCTTCTAG
66362 TTTT
1 TTTT
66366 TAGGCAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTCTTCTAG
Found at i:67155 original size:15 final size:15
Alignment explanation
Indices: 67125--67166 Score: 66
Period size: 15 Copynumber: 2.7 Consensus size: 15
67115 TTACTTTGCT
67125 TTGTTTTCTAGTTTAA
1 TTGTTTTCT-GTTTAA
67141 TTGTTTTCTGTTTAA
1 TTGTTTTCTGTTTAA
*
67156 TTGCTTTCTGT
1 TTGTTTTCTGT
67167 CAATCTCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 16 0.64
16 9 0.36
ACGTcount: A:0.12, C:0.10, G:0.14, T:0.64
Consensus pattern (15 bp):
TTGTTTTCTGTTTAA
Found at i:75168 original size:31 final size:29
Alignment explanation
Indices: 75084--75180 Score: 119
Period size: 26 Copynumber: 3.3 Consensus size: 29
75074 GCATTTTAAA
* *
75084 AAAAAATAATTTTTCTCTTATTTTTGCGAT
1 AAAAAA-AATTTCTCTCTTATTTTTGCGTT
*
75114 AAAAAAAA-TTGT-T-TTATTTTTGCGTT
1 AAAAAAAATTTCTCTCTTATTTTTGCGTT
75140 AAAAAAAATTTCTCTCTTATTTTTTTGCGTT
1 AAAAAAAATTTCTCTCTTA--TTTTTGCGTT
75171 AAAAAAAATT
1 AAAAAAAATT
75181 ATTTTCTGTT
Statistics
Matches: 59, Mismatches: 3, Indels: 9
0.83 0.04 0.13
Matches are distributed among these distances:
26 20 0.34
27 4 0.07
28 4 0.07
29 5 0.08
30 6 0.10
31 20 0.34
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.47
Consensus pattern (29 bp):
AAAAAAAATTTCTCTCTTATTTTTGCGTT
Found at i:78305 original size:16 final size:17
Alignment explanation
Indices: 78286--78322 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
78276 TTTACTAACA
78286 TTTAATTTT-TCTTTCT
1 TTTAATTTTCTCTTTCT
*
78302 TTTAATTTTCTTTTTCT
1 TTTAATTTTCTCTTTCT
78319 TTTA
1 TTTA
78323 GGATTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.14, C:0.11, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTAATTTTCTCTTTCT
Found at i:80104 original size:30 final size:30
Alignment explanation
Indices: 80068--80128 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
80058 GAAGTTCGTG
*
80068 ATTGAAGATTTATTGAAG-ATAATTTCAAGA
1 ATTGAAGA-TCATTGAAGAATAATTTCAAGA
* *
80098 ATTGAAGATCATTTAAGAATTATTTCAAGA
1 ATTGAAGATCATTGAAGAATAATTTCAAGA
80128 A
1 A
80129 GCAAGAATTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.36
Consensus pattern (30 bp):
ATTGAAGATCATTGAAGAATAATTTCAAGA
Found at i:80117 original size:18 final size:19
Alignment explanation
Indices: 80079--80118 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
80069 TTGAAGATTT
80079 ATTGAAGATAATTTCAAGA
1 ATTGAAGATAATTTCAAGA
*
80098 ATTGAAGATCATTT-AAGA
1 ATTGAAGATAATTTCAAGA
80116 ATT
1 ATT
80119 ATTTCAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (19 bp):
ATTGAAGATAATTTCAAGA
Found at i:83351 original size:20 final size:22
Alignment explanation
Indices: 83315--83355 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
83305 CTACTCGGGC
83315 TCGACTCGAGAAAAATTCGAGT
1 TCGACTCGAGAAAAATTCGAGT
83337 TCGACTCG-G-AAAATTCGAG
1 TCGACTCGAGAAAAATTCGAG
83356 CCGAGCTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 1 0.05
22 8 0.42
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (22 bp):
TCGACTCGAGAAAAATTCGAGT
Found at i:83364 original size:20 final size:20
Alignment explanation
Indices: 83316--83364 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
83306 TACTCGGGCT
*
83316 CGACTCGAGAAAAATTCGAGTT
1 CGACTCG-G-AAAATTCGAGTC
83338 CGACTCGGAAAATTCGAG-C
1 CGACTCGGAAAATTCGAGTC
83357 CGAGCTCG
1 CGA-CTCG
83365 AGCTCAAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 3 0.12
20 14 0.56
21 1 0.04
22 7 0.28
ACGTcount: A:0.31, C:0.24, G:0.27, T:0.18
Consensus pattern (20 bp):
CGACTCGGAAAATTCGAGTC
Found at i:85290 original size:114 final size:114
Alignment explanation
Indices: 85063--85290 Score: 259
Period size: 115 Copynumber: 2.0 Consensus size: 114
85053 TAATGACAAT
*
85063 AACGATTTAAAAATCATTGTGTATATGTAAACTTTTGGTGTCAATTGAAAAAAACAAAATTATGT
1 AACGATTTAAAAATCATGGTGTATATGTAAACTTTTGGTGTCAATTGAAAAAAACAAAATTA-GT
* *
85128 CAACTTCTGATGCCAATTGGAAATCAATTATGACAACTTCTAGTGTCAAC
65 CAACTTCTGATGCCAATTGGAAATCAATTATGACAAATTCTAGAGTCAAC
* * **
85178 AACGATTTAAAATTCATGGTTTATATG-ACAACTTCTT-GTGTCAATTGAAAAAATGAAACTATT
1 AACGATTTAAAAATCATGGTGTATATGTA-AACTT-TTGGTGTCAATTGAAAAAAACAAA--ATT
* * * * *
85241 A-T-AACTTCAT-ATGTCAATTGGAAATTAGTTATGATAAATTCTGGAGTCAA
62 AGTCAACTTC-TGATGCCAATTGGAAATCAATTATGACAAATTCTAGAGTCAA
85291 TTGGAAAAAA
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
114 40 0.42
115 50 0.52
116 2 0.02
117 4 0.04
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (114 bp):
AACGATTTAAAAATCATGGTGTATATGTAAACTTTTGGTGTCAATTGAAAAAAACAAAATTAGTC
AACTTCTGATGCCAATTGGAAATCAATTATGACAAATTCTAGAGTCAAC
Found at i:96993 original size:1 final size:1
Alignment explanation
Indices: 96987--97021 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
96977 TATTTATCTT
**
96987 CCCCCCCCCCCCCCCTACCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
97022 TCTCTGTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 31 1.00
ACGTcount: A:0.03, C:0.94, G:0.00, T:0.03
Consensus pattern (1 bp):
C
Found at i:129298 original size:17 final size:17
Alignment explanation
Indices: 129261--129298 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
129251 ACTATCCTTA
*
129261 TGTTAATGAAGATATTC
1 TGTTAATGAAGACATTC
*
129278 TGTTAATGAAGACATTG
1 TGTTAATGAAGACATTC
129295 TGTT
1 TGTT
129299 GAACTTTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (17 bp):
TGTTAATGAAGACATTC
Found at i:129653 original size:68 final size:68
Alignment explanation
Indices: 129544--129678 Score: 218
Period size: 68 Copynumber: 2.0 Consensus size: 68
129534 TGCTTGAAAT
* * *
129544 GCATTGTCTTTATATGTAATTTTAGCATTTGGATTTAATTAATCGTGTTCCTACCATTTTTCCTT
1 GCATTGTCTTTATATGTAATTTTAGCATTTGGATGTAATTAATCGTATTCCCACCATTTTTCCTT
129609 AGG
66 AGG
*
129612 GCATTGTCTTTATATGTAATTTTAGCA-TTGAGATGTAATTAATGGTATTCCCACCATTTTTCCT
1 GCATTGTCTTTATATGTAATTTTAGCATTTG-GATGTAATTAATCGTATTCCCACCATTTTTCCT
129676 TAG
65 TAG
129679 TTGTTAGTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
67 3 0.05
68 59 0.95
ACGTcount: A:0.24, C:0.15, G:0.15, T:0.47
Consensus pattern (68 bp):
GCATTGTCTTTATATGTAATTTTAGCATTTGGATGTAATTAATCGTATTCCCACCATTTTTCCTT
AGG
Found at i:130003 original size:25 final size:24
Alignment explanation
Indices: 129962--130008 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
129952 ACTATTTATT
129962 ATATTATTATTTCATTTAGATTTGG
1 ATATTATTATTTCATTT-GATTTGG
*
129987 ATATTTTTATTAT-ATTTGATTT
1 ATATTATTATT-TCATTTGATTT
130009 ATAAAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 5 0.25
25 14 0.70
26 1 0.05
ACGTcount: A:0.28, C:0.02, G:0.09, T:0.62
Consensus pattern (24 bp):
ATATTATTATTTCATTTGATTTGG
Found at i:130541 original size:23 final size:23
Alignment explanation
Indices: 130515--130561 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
130505 TTTTTCTCTT
130515 TCACTTGTTTTTTTGGATCAAAC
1 TCACTTGTTTTTTTGGATCAAAC
130538 TCACTTGTTTTTTTGGATCAAAC
1 TCACTTGTTTTTTTGGATCAAAC
130561 T
1 T
130562 ATTCCAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (23 bp):
TCACTTGTTTTTTTGGATCAAAC
Found at i:131791 original size:24 final size:24
Alignment explanation
Indices: 131747--131792 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
131737 TATTTATATT
*
131747 ATATTATTATTCATTTAAATTTGA
1 ATATTATTATTCATATAAATTTGA
*
131771 ATATTCTTATT-ATATATAATTT
1 ATATTATTATTCATATA-AATTT
131793 ATAAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 15 0.79
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
ATATTATTATTCATATAAATTTGA
Found at i:131917 original size:2 final size:2
Alignment explanation
Indices: 131910--131938 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
131900 TACTAGTATG
131910 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
131939 GTTAATAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:134283 original size:6 final size:6
Alignment explanation
Indices: 134272--134315 Score: 79
Period size: 6 Copynumber: 7.2 Consensus size: 6
134262 CGTTAATGAC
134272 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TACTATA T
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA T-CTATA T
134316 AAGTCTAAAC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 31 0.84
7 6 0.16
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTATA
Found at i:134852 original size:306 final size:306
Alignment explanation
Indices: 134293--134919 Score: 1150
Period size: 306 Copynumber: 2.0 Consensus size: 306
134283 ATCTATATCT
134293 ATATCTATATCTATATACTATATAAGTCTAAACTTCAAAACCATTGACCTGAAATATCTAAAATA
1 ATATC-ATATCTATATACTATATAAGTCTAAACTTCAAAACCATTGACCTGAAATATCTAAAATA
134358 ACCTTTTTAATTTTAAAAGTTTAGTATTCATTTAAAGGGTATACATGTATTTTTATTTCATTTAA
65 ACCTTTTTAATTTTAAAAGTTTAGTATTCATTTAAAGGGTATACATGTATTTTTATTTCATTTAA
*
134423 ATTAATTAATTTTTTTCTTTAAAATCTCTTGATATCTAATATTTTCTTACGCCTTATCTCAAAAA
130 ATTAATTAATTTTTTTCTTTAAAATCTCTTAATATCTAATATTTTCTTACGCCTTATCTCAAAAA
* *
134488 AAAAATAATTTCTTACACTATAACCAAATCAACTAACCGAAAATTATAATCTAACTAAACCACTT
195 AAAAATAATATCTTACACTATAACCAAATCAACTAACCGAAAATTAAAATCTAACTAAACCACTT
134553 TACTTCTATTTAGGACCGTTAATAAAGTTATAAATTGGTTGGTTGCA
260 TACTTCTATTTAGGACCGTTAATAAAGTTATAAATTGGTTGGTTGCA
*
134600 ATATCATATCTATATACTATATAAGTCTAAACTTCAAAATCATTGACCTGAAATATCTAAAATAA
1 ATATCATATCTATATACTATATAAGTCTAAACTTCAAAACCATTGACCTGAAATATCTAAAATAA
134665 CCTTTTTAATTTTAAAAGTTTAGTATTCATTTAAAGGGTATACATGTATTTTTATTTCATTTAAA
66 CCTTTTTAATTTTAAAAGTTTAGTATTCATTTAAAGGGTATACATGTATTTTTATTTCATTTAAA
134730 TTAATTAATTATATTTTCTTTAAAATCTCTTAATATCTAATATTTTCTTACGCCTTATCTCAAAA
131 TTAATTAATT-T-TTTTCTTTAAAATCTCTTAATATCTAATATTTTCTTACGCCTTATCTCAAAA
* *
134795 AAAAAA-AA-ATCTTACACTATAACGAAATCAACTAACCGAAGATTAAAATCTAACTAAACCACT
194 AAAAAATAATATCTTACACTATAACCAAATCAACTAACCGAAAATTAAAATCTAACTAAACCACT
134858 TTACTTCTATTTAGGACCGTTAATAAAGTTATAAATTGGTTGGTTGCA
259 TTACTTCTATTTAGGACCGTTAATAAAGTTATAAATTGGTTGGTTGCA
*
134906 ATATCATATATATA
1 ATATCATATCTATA
134920 AACGAAAAAG
Statistics
Matches: 311, Mismatches: 7, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
306 246 0.79
307 8 0.03
308 57 0.18
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (306 bp):
ATATCATATCTATATACTATATAAGTCTAAACTTCAAAACCATTGACCTGAAATATCTAAAATAA
CCTTTTTAATTTTAAAAGTTTAGTATTCATTTAAAGGGTATACATGTATTTTTATTTCATTTAAA
TTAATTAATTTTTTTCTTTAAAATCTCTTAATATCTAATATTTTCTTACGCCTTATCTCAAAAAA
AAAATAATATCTTACACTATAACCAAATCAACTAACCGAAAATTAAAATCTAACTAAACCACTTT
ACTTCTATTTAGGACCGTTAATAAAGTTATAAATTGGTTGGTTGCA
Done.