Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019001.1 Corchorus olitorius cultivar O-4 contig19034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58826

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73--479
203
2.0
203
92
1
674
35
11
8
44
1.70
997--1066
36
1.9
36
91
0
113
60
8
10
21
1.55
2337--2451
58
2.0
58
84
6
153
31
20
13
33
1.92
3346--3392
22
2.0
25
84
12
64
21
21
6
51
1.70
5459--5494
17
2.1
17
89
0
54
30
11
19
38
1.86
7999--8069
30
2.4
30
80
4
81
25
26
25
22
2.00
8049--8117
18
3.8
18
70
0
66
17
28
24
28
1.97
9887--9922
17
2.1
17
89
0
54
30
11
19
38
1.86
10580--11014
214
2.0
214
98
0
843
34
15
6
44
1.72
13719--13754
2
19.0
2
88
11
58
50
0
0
50
1.00
17253--17311
11
5.7
10
75
17
50
33
20
5
40
1.74
18728--18772
16
2.9
16
75
18
51
57
2
13
26
1.48
25387--26060
337
2.0
337
96
0
1249
26
16
25
31
1.96
26323--26375
21
2.5
21
75
0
52
18
28
43
9
1.81
29236--29327
26
3.3
27
74
7
87
42
15
5
36
1.70
29266--29313
24
1.9
25
87
8
71
43
18
2
35
1.62
32050--32091
21
2.0
22
85
4
59
21
28
14
35
1.92
34071--34122
14
3.8
13
90
7
77
80
0
13
5
0.88
34880--34912
14
2.3
15
89
5
50
69
0
18
12
1.18
35180--35331
49
3.1
49
84
2
180
30
15
15
37
1.90
35187--35332
50
2.9
49
83
5
177
31
16
16
35
1.91
36056--36274
69
3.2
68
86
3
280
24
27
17
29
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35937--36448
241
2.1
240
89
2
776
26
26
15
30
1.96
36301--36448
68
2.2
69
83
1
190
25
25
16
33
1.96
39102--39146
16
2.9
16
75
18
51
57
2
13
26
1.48
43575--43771
98
2.0
98
86
7
276
28
20
10
40
1.86
52013--52183
30
5.9
27
74
14
94
51
1
8
39
1.39
51987--52093
44
2.3
47
88
4
157
53
0
9
37
1.33
52010--52183
74
2.4
74
91
4
275
51
1
8
39
1.39
52078--52221
44
3.3
43
85
3
207
51
1
8
38
1.41
52048--52211
30
5.5
30
73
16
128
51
1
8
38
1.40
52251--52329
32
2.5
32
81
4
79
27
21
21
29
1.99
52262--52393
32
4.2
32
72
11
103
22
18
22
36
1.95
56408--56485
31
2.4
33
79
10
81
25
6
6
61
1.44
57437--57581
78
1.9
77
84
8
195
53
23
11
12
1.70
57921--57975
22
2.5
22
85
5
67
50
10
10
27
1.70
58446--58485
12
3.3
12
85
0
62
32
5
45
17
1.70

Tables:   1

The End!