Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019002.1 Corchorus olitorius cultivar O-4 contig19035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46117

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1385--1630
131
1.9
126
90
7
392
49
1
10
38
1.46
1385--1638
123
2.0
126
89
6
390
49
1
11
38
1.48
1406--1664
123
2.0
127
84
7
339
49
2
11
36
1.51
18329--18375
23
2.0
23
95
0
85
42
17
4
36
1.68
22539--22754
22
9.7
22
73
9
134
35
9
17
37
1.82
22536--22935
66
5.9
67
73
14
261
36
8
18
37
1.81
22797--22935
22
6.5
21
73
14
99
35
5
19
39
1.76
22777--22935
44
3.7
43
72
13
139
36
6
18
38
1.78
22980--23019
20
1.9
20
85
10
53
37
10
12
40
1.77
22991--23031
20
2.0
20
85
0
55
41
7
12
39
1.70
23169--23635
22
21.3
21
70
16
184
37
10
16
35
1.83
23159--23635
44
10.9
43
70
12
244
37
10
16
35
1.83
23344--23446
45
2.3
45
83
3
118
38
10
12
37
1.78
23608--23655
22
2.2
22
85
3
62
54
4
14
27
1.59
23895--23950
22
2.5
22
79
0
58
41
14
8
35
1.77
24154--24340
22
8.5
22
71
9
96
34
18
10
36
1.86
24311--24366
26
2.1
27
83
9
71
39
8
8
42
1.68
24409--24597
22
8.6
21
70
17
107
37
13
11
37
1.81
29903--29943
22
1.9
22
95
5
75
43
17
4
34
1.70
30658--30724
22
3.1
21
80
16
75
40
11
5
41
1.66
30651--30707
22
2.7
22
84
12
59
43
10
7
38
1.66
30817--31552
22
33.5
22
68
16
238
37
17
9
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31143--31265
65
1.9
65
100
0
246
40
17
7
34
1.77
31270--31390
43
2.8
44
80
9
131
33
16
9
40
1.82
31341--31417
27
3.0
27
85
7
99
35
14
6
44
1.71
32594--32644
26
2.0
25
85
14
68
47
1
9
41
1.48
32700--32736
2
18.0
2
88
5
56
48
0
5
45
1.25
33882--33924
21
2.0
21
82
8
52
27
2
60
9
1.40
35701--35762
30
2.1
30
96
0
115
45
4
24
25
1.73
36048--36096
24
2.0
24
84
7
64
51
22
2
24
1.59
36395--36420
6
4.3
6
100
0
52
50
34
0
15
1.45
36450--36597
38
3.9
38
91
1
226
22
35
18
23
1.96
36450--36597
77
1.9
75
89
2
224
22
35
18
23
1.96
42201--42226
2
13.0
2
100
0
52
0
50
0
50
1.00

Tables:   1

The End!