Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019005.1 Corchorus olitorius cultivar O-4 contig19038, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25444

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1189--1245
25
2.3
24
88
5
96
40
7
17
35
1.77
10361--10465
50
2.1
50
90
0
165
32
5
19
42
1.74
11028--11092
2
36.5
2
73
22
56
53
0
1
44
1.09
11023--11088
34
1.9
34
87
6
98
54
0
1
43
1.09
11012--11096
12
7.2
12
74
19
72
52
0
1
45
1.08
20197--20252
3
18.7
3
100
0
112
67
0
0
32
0.91
20582--20611
6
4.8
6
95
4
51
33
3
0
63
1.11
23751--23788
2
19.5
2
94
5
69
47
0
0
52
1.00
24828--24857
16
1.9
15
93
6
51
33
6
0
60
1.23
25229--25296
16
4.2
16
75
7
75
42
38
10
8
1.70

Tables:   1

The End!