Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019006.1 Corchorus olitorius cultivar O-4 contig19039, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68890

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
783--818
2
19.0
2
88
11
58
52
0
0
47
1.00
1420--1461
15
2.7
15
83
16
59
40
35
11
11
1.79
7912--7949
18
2.2
17
95
4
67
60
0
0
39
0.97
17828--17867
20
2.0
21
85
5
55
32
15
25
27
1.95
17872--18032
80
2.0
80
100
0
322
30
14
13
40
1.85
21650--21706
30
1.9
30
85
7
80
43
5
17
33
1.71
32651--32688
2
19.0
2
100
0
76
50
0
0
50
1.00
38037--38061
11
2.3
11
100
0
50
12
36
0
52
1.39
40230--40527
148
2.0
148
90
1
463
35
18
22
24
1.96
44555--44579
2
12.5
2
100
0
50
52
0
0
48
1.00
45175--45236
30
2.1
30
96
0
115
25
22
6
45
1.76
45757--45799
2
21.5
2
100
0
86
48
0
0
51
1.00
49716--49740
2
12.5
2
100
0
50
52
0
48
0
1.00
49738--49772
3
11.7
3
100
0
70
65
0
34
0
0.93
52219--52312
46
2.0
46
100
0
188
40
12
25
21
1.89
52378--52548
40
4.1
40
78
12
198
32
13
12
41
1.81
52432--52569
40
3.0
49
71
18
168
33
11
16
38
1.85
52392--52569
89
2.0
89
100
0
356
33
12
14
39
1.84
53099--53131
2
16.5
2
100
0
66
48
0
0
51
1.00
60536--60568
12
2.8
12
95
0
57
51
42
0
6
1.26
62785--62869
2
46.0
2
68
15
58
54
2
0
43
1.13
62786--62867
8
9.9
8
75
20
71
54
2
0
42
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62785--62867
16
4.9
17
81
13
100
54
2
0
43
1.13
62787--62858
17
4.4
16
83
16
94
54
2
0
43
1.15
63961--64488
180
2.9
178
79
5
519
38
20
14
25
1.91
63961--64488
179
2.9
178
77
7
498
38
20
14
25
1.91
65221--65247
7
3.9
7
100
0
54
29
0
70
0
0.88
67743--67768
3
8.7
3
100
0
52
30
0
0
69
0.89
68689--68726
17
2.2
17
95
0
67
50
0
0
50
1.00

Tables:   1

The End!