Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019008.1 Corchorus olitorius cultivar O-4 contig19041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46570

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7217--7251
18
1.9
18
88
11
54
37
2
0
60
1.12
8841--8885
23
2.0
23
86
0
63
46
20
17
15
1.84
12427--12461
16
2.2
16
100
0
70
45
17
25
11
1.81
12557--12757
41
4.9
41
83
5
235
37
20
13
28
1.90
12557--12757
85
2.4
83
83
7
239
37
20
13
28
1.90
14314--15109
420
1.9
420
85
3
1109
31
14
13
40
1.85
16726--16888
31
5.3
31
80
1
159
33
26
23
16
1.96
16729--16861
62
2.1
62
85
0
176
33
26
23
17
1.96
17769--17793
13
1.9
13
100
0
50
92
0
8
0
0.40
22278--22362
3
28.3
3
73
9
57
54
2
2
41
1.26
22281--22362
30
2.7
30
80
14
105
53
2
2
41
1.27
22816--22863
21
2.3
21
85
7
62
52
0
2
45
1.12
22820--22901
30
2.7
30
77
7
103
50
3
2
43
1.33
23773--23810
11
3.5
11
85
10
51
57
2
0
39
1.12
24009--24052
16
2.6
17
92
7
81
13
13
0
72
1.12
27765--27805
19
2.2
19
86
8
57
53
0
9
36
1.34
33358--33384
7
3.9
7
100
0
54
29
14
29
25
1.95
36028--36057
15
2.0
15
93
0
51
6
16
0
76
0.99
36027--36057
16
2.0
15
93
6
53
6
16
0
77
0.97
36808--37098
161
1.8
162
90
4
473
39
8
2
49
1.47
37431--37494
27
2.4
27
100
0
128
48
9
26
15
1.75
43287--43407
16
7.6
16
73
1
91
8
14
36
40
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43287--43407
32
3.8
32
75
6
111
8
14
36
40
1.77
43573--43606
8
4.4
8
96
3
61
61
0
0
38
0.96
43573--43609
13
2.9
13
88
11
51
62
0
0
37
0.96
43621--43645
2
12.5
2
100
0
50
52
0
0
48
1.00
45723--45766
22
2.0
22
86
8
63
9
15
43
31
1.79
46177--46318
49
3.0
47
84
11
180
50
5
16
27
1.68

Tables:   1

The End!