Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019010.1 Corchorus olitorius cultivar O-4 contig19043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76783

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1204--1253
15
3.3
15
91
0
73
18
26
14
42
1.87
2077--2218
49
3.0
47
80
9
151
50
4
15
28
1.65
3496--3524
9
3.3
9
95
4
51
37
17
0
44
1.49
4895--4936
19
2.2
19
86
4
57
42
9
14
33
1.78
12403--12435
13
2.4
14
90
5
50
54
21
6
18
1.64
13748--13782
2
18.0
2
94
5
63
51
0
0
48
1.00
14094--14174
42
1.9
42
94
0
144
29
7
14
48
1.71
15135--15206
29
2.5
29
80
6
76
43
1
6
48
1.38
15638--15798
83
1.9
83
97
0
304
29
12
8
49
1.70
16608--16675
32
2.1
33
88
2
102
39
7
5
47
1.56
19749--19790
17
2.4
18
88
4
59
54
0
0
45
0.99
23091--23260
22
7.6
22
69
8
83
36
10
9
43
1.72
23204--23286
22
3.7
23
71
15
66
31
14
7
46
1.71
33613--33773
82
2.0
82
88
2
243
32
21
15
31
1.94
39366--39413
17
2.6
20
75
21
59
56
16
8
18
1.65
40278--40339
3
21.0
3
77
9
65
35
3
1
59
1.23
40553--40593
2
20.5
2
100
0
82
51
0
0
48
1.00
41084--41133
3
16.3
3
95
4
91
34
0
0
66
0.92
44678--44734
24
2.3
24
93
3
96
49
15
5
29
1.67
46021--46059
20
2.0
19
85
5
51
30
0
2
66
1.05
52232--52266
1
35.0
1
100
0
70
0
0
0
100
0.00
62010--62093
29
2.8
29
76
11
89
38
16
26
19
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65611--65645
2
17.5
2
100
0
70
48
0
0
51
1.00
68206--68282
22
3.5
22
83
1
93
41
12
7
37
1.73
71500--71565
33
2.0
33
93
0
114
33
13
13
39
1.84
72097--72220
47
2.6
47
93
0
212
41
14
12
30
1.83

Tables:   1

The End!