Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019011.1 Corchorus olitorius cultivar O-4 contig19044, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30920

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--33
2
15.5
2
100
0
62
51
0
0
48
1.00
5614--5661
20
2.4
20
79
6
53
56
6
31
6
1.49
11782--11902
59
2.1
58
96
1
224
40
7
22
29
1.81
12001--12064
14
4.4
14
90
9
101
37
0
0
62
0.95
12072--12465
219
1.8
214
87
4
506
20
22
12
44
1.84
13382--13425
16
2.8
16
85
0
70
40
40
13
4
1.65
14109--14166
23
2.4
24
77
5
64
36
1
12
50
1.50
14216--14258
2
22.5
2
86
9
63
48
0
2
48
1.14
15077--15110
17
2.0
17
88
0
50
47
38
14
0
1.45
15024--15172
68
2.2
68
86
4
205
39
34
15
10
1.82
15162--15199
15
2.4
17
87
12
55
36
39
13
10
1.79
15614--15691
35
2.2
37
95
4
142
42
16
5
35
1.71
20295--20325
2
15.5
2
100
0
62
51
0
0
48
1.00
24346--24411
28
2.4
27
75
7
69
39
12
24
24
1.89
25039--25085
5
9.4
5
83
6
51
14
4
2
78
0.99
28995--29035
15
2.7
15
88
3
55
12
12
14
60
1.58
29388--29465
24
3.4
22
81
13
86
38
10
14
37
1.80
29386--29455
26
2.8
25
89
8
108
42
10
12
34
1.77

Tables:   1

The End!