Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019013.1 Corchorus olitorius cultivar O-4 contig19046, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5979
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Found at i:3638 original size:37 final size:38
Alignment explanation
Indices: 3597--3677 Score: 94
Period size: 37 Copynumber: 2.1 Consensus size: 38
3587 GAAACCTTCC
** *
3597 TCAAAGTGTGATCTTTTCAAA-AG-GAAAAATGTTTTCT
1 TCAAAGTGCAATCTTTTCAAACAGAAAAAAATGTTTT-T
*
3634 TCAAAGTGCAATCTTTTGAAACGAGAAAAAAATGTTTTT
1 TCAAAGTGCAATCTTTTCAAAC-AGAAAAAAATGTTTTT
3673 TCAAA
1 TCAAA
3678 AAGATTTTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
37 18 0.49
39 8 0.22
40 11 0.30
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.35
Consensus pattern (38 bp):
TCAAAGTGCAATCTTTTCAAACAGAAAAAAATGTTTTT
Found at i:4790 original size:54 final size:54
Alignment explanation
Indices: 4731--4996 Score: 235
Period size: 54 Copynumber: 5.0 Consensus size: 54
4721 CAGTTGTTTA
* * * *
4731 AGATGAGCCAGTGTGGTCTTTCATAGAAGTTTTTAGAAATCTA-AGTTGATCTTC
1 AGATGACCCAGTGCGGTCTTTCATAGAAGTTTTTAGAGATC-AGAGTTGATCTCC
** * * **
4785 AGATGACCCTTTGCAGTCTTTCATAAGAAGTTTTCA-ATGATCAGAGTTGATCTTA
1 AGATGACCCAGTGCGGTCTTTCAT-AGAAGTTTTTAGA-GATCAGAGTTGATCTCC
* * * *
4840 AGTTGACCCCGTGCGGTCTTTCAAAGAAGTTTTTAGAGATCATAGTTGATC-CC
1 AGATGACCCAGTGCGGTCTTTCATAGAAGTTTTTAGAGATCAGAGTTGATCTCC
* *
4893 AGAT---CCAGTGCGGTCGTTCCA-AGAAGTTTTTAGAGATCAGAGTTGATCCCC
1 AGATGACCCAGTGCGGTC-TTTCATAGAAGTTTTTAGAGATCAGAGTTGATCTCC
* * * *
4944 AGATGATCCAGTGCGGTCGTTCCA-ATAAG-TTTTCGATGATCAGAGTTGATCTC
1 AGATGACCCAGTGCGGTC-TTTCATAGAAGTTTTTAGA-GATCAGAGTTGATCTC
4997 AGTCCAAGAA
Statistics
Matches: 178, Mismatches: 24, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
50 36 0.20
51 10 0.06
53 9 0.05
54 80 0.45
55 43 0.24
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (54 bp):
AGATGACCCAGTGCGGTCTTTCATAGAAGTTTTTAGAGATCAGAGTTGATCTCC
Found at i:4925 original size:50 final size:50
Alignment explanation
Indices: 4850--5002 Score: 193
Period size: 50 Copynumber: 3.0 Consensus size: 50
4840 AGTTGACCCC
* * *
4850 GTGCGGTCTTTCAAAGAAGTTTTTAGAGATCATAGTTGATCCCAGATCCA
1 GTGCGGTCGTTCCAAGAAGTTTTTAGAGATCAGAGTTGATCCCAGATCCA
4900 GTGCGGTCGTTCCAAGAAGTTTTTAGAGATCAGAGTTGATCCCCAGATGATCCA
1 GTGCGGTCGTTCCAAGAAGTTTTTAGAGATCAGAGTTGAT-CCC--A-GATCCA
* * *
4954 GTGCGGTCGTTCCAATAAG-TTTTCGATGATCAGAGTTGATCTCAG-TCCA
1 GTGCGGTCGTTCCAAGAAGTTTTTAGA-GATCAGAGTTGATCCCAGATCCA
5003 AGAAGTTTTT
Statistics
Matches: 92, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
49 4 0.04
50 38 0.41
51 4 0.04
53 9 0.10
54 37 0.40
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (50 bp):
GTGCGGTCGTTCCAAGAAGTTTTTAGAGATCAGAGTTGATCCCAGATCCA
Found at i:4959 original size:104 final size:105
Alignment explanation
Indices: 4730--5002 Score: 250
Period size: 104 Copynumber: 2.6 Consensus size: 105
4720 ACAGTTGTTT
* * * *
4730 AAGATGAGCCAGTGTGGTCTTTCATAGAAGTTTTTAGAAATC-TAAGTTGATCTTCAGATGACCC
1 AAGATGACCCAGTGCGGTCTTTCAAAGAAGTTTTTAGAGATCAT-AGTTGATC-TCAGAT---CC
** * * **
4794 TTTGCAGTCTTTCATAAGAAGTTTTCAATGATCAGAGTTGATCTT
61 AGTGCAGTCGTTCACAAGAAGTTTTCAATGATCAGAGTTGATCCC
* * *
4839 AAGTTGACCCCGTGCGGTCTTTCAAAGAAGTTTTTAGAGATCATAGTTGATCCCAGATCCAGTGC
1 AAGATGACCCAGTGCGGTCTTTCAAAGAAGTTTTTAGAGATCATAGTTGATCTCAGATCCAGTGC
* *
4904 GGTCGTTC-CAAGAAGTTTTTAGA-GATCAGAGTTGATCCC
66 AGTCGTTCACAAGAAGTTTTCA-ATGATCAGAGTTGATCCC
* * * * * * *
4943 CAGATGATCCAGTGCGGTCGTTCCAATAAG-TTTTCGATGATCAGAGTTGATCTCAG-TCCA
1 AAGATGACCCAGTGCGGTCTTTCAAAGAAGTTTTTAGA-GATCATAGTTGATCTCAGATCCA
5003 AGAAGTTTTT
Statistics
Matches: 136, Mismatches: 25, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
103 10 0.07
104 64 0.47
105 12 0.09
108 5 0.04
109 44 0.32
110 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (105 bp):
AAGATGACCCAGTGCGGTCTTTCAAAGAAGTTTTTAGAGATCATAGTTGATCTCAGATCCAGTGC
AGTCGTTCACAAGAAGTTTTCAATGATCAGAGTTGATCCC
Found at i:5009 original size:35 final size:35
Alignment explanation
Indices: 4963--5238 Score: 365
Period size: 35 Copynumber: 7.9 Consensus size: 35
4953 AGTGCGGTCG
*
4963 TTCCAATAAGTTTTCGATGATCAGAGTTGATCTCA
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
* * *
4998 GTCCAAGAAGTTTTTGATGATCAGAGTTGATCTCG
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
* ** * *
5033 TTTCAAGAAGTTTTTTATGATCAGAGTTGAGCTCC
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
* *
5068 TTTCAAGAAGTTTTCGATGATTAGAGTTGATCTCA
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
* *
5103 TTCCAAGAAGTTTT-TATGATCAGAGTTGATCTCC
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
** *
5137 TTTTAAGAAGTTTTCGATGATCAGAGTTGATCTCG
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
* *
5172 TTGCAAGAAGTTTTCGATGGTCAGAGTTGATCTCA
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
* *
5207 TTCTAAGAAGTTTTCGAGGATCAGAGTTGATC
1 TTCCAAGAAGTTTTCGATGATCAGAGTTGATC
5239 CCAGATGATC
Statistics
Matches: 210, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
34 29 0.14
35 181 0.86
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (35 bp):
TTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCA
Found at i:5056 original size:70 final size:70
Alignment explanation
Indices: 4960--5968 Score: 834
Period size: 70 Copynumber: 14.2 Consensus size: 70
4950 TCCAGTGCGG
* * *
4960 TCGTTCCAATAAGTTTTCGATGATCAGAGTTGATCTCAGTCCAAGAAGTTTTTGATGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5025 TGATC
66 TGATC
* ** * * * *
5030 TCGTTTCAAGAAGTTTTTTATGATCAGAGTTGAGCTCCTTTCAAGAAGTTTTCGATGATTAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5095 TGATC
66 TGATC
* * * **
5100 TCATTCCAAGAAGTTTT-TATGATCAGAGTTGATCTCCTTTTAAGAAGTTTTCGATGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5164 TGATC
66 TGATC
* * * *
5169 TCGTTGCAAGAAGTTTTCGATGGTCAGAGTTGATCTCATTCTAAGAAGTTTTCGAGGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5234 TGATC
66 TGATC
* * * * * *
5239 CCAGATGATCC-TG-TGATCTC-AT-TTCAAGAAGTT--T-TCGATGAT-C-AG-AGTTGATCTC
1 TC-G-T--TCCAAGAAGTTTTCGATGATC-AG-AGTTGATCTC-AT--TCCAAGAAGTT--T-TC
* *
5294 -AT-TTCAAGAAGTTTTTTATC
54 GATGATC-AG-AG---TTGATC
** * ** *
5314 -CGAGTTGATCTCATTCCAAGAAGTTTTTATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGA
1 TC--G-T--TC-CA--AGAAG--TTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGA
5378 TGATCAGAGTTGATC
56 TGATCAGAGTTGATC
* * ** * * * *
5393 TCATTTCAAGAA-TTTTTAATGATCAGAGTTGTTCTCCTTTCAAGAAGTTTTCGATTATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5457 TGATC
66 TGATC
* * * * * *** *
5462 TCGTTTCAAGAAGTTTTGGTTGATCAAAGTTGATCTCATTTCAAGAAGTTTTTTTTTTTAT-AGA
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAG--TTTTCGATGATCAGA
5526 GTTGATC
64 GTTGATC
* * * *
5533 TCGTTTCAAGAAGTTTT-TATGATCAGAGTTGATCTCATTTCAAGAAGTTTT-TATGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5596 TGATC
66 TGATC
* * * *
5601 TCCTTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGGTGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5666 TGATC
66 TGATC
* * * **
5671 TCCTTTCAAGAAGTTTTCGATGATCAGAGTTGATCACATTTTAAGAAGTTTT-GATGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5735 TGATC
66 TGATC
* * * * *
5740 ACATTTCAAGAAGTTTTCGATGATCAGGGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5805 TGATC
66 TGATC
* * * * **
5810 TCGTTTCAAGAAGTTTTCGATGATTAGAGATGATCTCATTTCAAGAAGTTTTTTATGATCAGAGT
1 TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
5875 TGATC
66 TGATC
* ** * * * *
5880 TCCTTTTAAGAAGATTTCG-TCGATCAGAGTTGATCTCATTTCAAGAAGTTTTTTCTATGGTCAG
1 TCGTTCCAAGAAGTTTTCGAT-GATCAGAGTTGATCTCATTCCAAGAAG--TTTTCGATGATCAG
*
5944 AGTTGATA
63 AGTTGATC
* *
5952 TCCTTTCAAGAAGTTTT
1 TCGTTCCAAGAAGTTTT
5969 TTTTTTTTTT
Statistics
Matches: 796, Mismatches: 96, Indels: 92
0.81 0.10 0.09
Matches are distributed among these distances:
67 4 0.01
68 30 0.04
69 230 0.29
70 374 0.47
71 36 0.05
72 58 0.07
73 1 0.00
74 5 0.01
75 13 0.02
76 1 0.00
77 1 0.00
79 5 0.01
80 2 0.00
82 11 0.01
83 10 0.01
84 9 0.01
85 6 0.01
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (70 bp):
TCGTTCCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTCCAAGAAGTTTTCGATGATCAGAGT
TGATC
Found at i:5132 original size:139 final size:140
Alignment explanation
Indices: 4970--5968 Score: 1052
Period size: 139 Copynumber: 7.0 Consensus size: 140
4960 TCGTTCCAAT
* * * *
4970 AAGTTTTCGATGATCAGAGTTGATCTCAGTCCAAGAAGTTTTTGATGATCAGAGTTGATCTCGTT
1 AAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATT
* *
5035 TCAAGAAGTTTTTTATGATCAGAGTTGAGCTCCTTTCAAGAAGTTTTCGATGATTAGAGTTGATC
66 TCAAGAAGTTTTTTATGATCAGAGTTGATCTCCTTTCAAGAAGTTTTCGATGATCAGAGTTGATC
*
5100 TCATTCCAAG
131 TCATTTCAAG
* * * *
5110 AAGTTTT-TATGATCAGAGTTGATCTCCTTTTAAGAAGTTTTCGATGATCAGAGTTGATCTCGTT
1 AAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATT
* ** * * *
5174 GCAAGAAGTTTTCGATGGTCAGAGTTGATCT-CATTCTAAGAAGTTTTCGAGGATCAGAGTTGAT
66 TCAAGAAGTTTTTTATGATCAGAGTTGATCTCCTTTC-AAGAAGTTTTCGATGATCAGAGTTGAT
* **
5238 CCCAGATGATCCTGTGATCTCATTTC
130 --C------T-C----ATTTCA--AG
** * *
5264 AAGAAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTT---TTATCCGAGTTGATCTC
1 AAG-TTTT--CGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTC
* *
5326 ATTCCAAGAAG-TTTTTATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTG
63 ATTTCAAGAAGTTTTTTATGATCAGAGTTGATCTCCTTTCAAGAAGTTTTCGATGATCAGAGTTG
5390 ATCTCATTTCAAG
128 ATCTCATTTCAAG
** * * * *
5403 AA-TTTTTAATGATCAGAGTTGTTCTCCTTTCAAGAAGTTTTCGATTATCAGAGTTGATCTCGTT
1 AAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATT
* * * *** *
5467 TCAAGAAGTTTTGGT-TGATCAAAGTTGATCTCATTTCAAGAAGTTTTTTTTTTTAT-AGAGTTG
66 TCAAGAAGTTTT-TTATGATCAGAGTTGATCTCCTTTCAAGAAG--TTTTCGATGATCAGAGTTG
*
5530 ATCTCGTTTCAAG
128 ATCTCATTTCAAG
* * *
5543 AAGTTTT-TATGATCAGAGTTGATCTCATTTCAAGAAGTTTT-TATGATCAGAGTTGATCTCCTT
1 AAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATT
** * *
5606 TCAAGAAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGGTGATCAGAGTTGATC
66 TCAAGAAGTTTTTTATGATCAGAGTTGATCTCCTTTCAAGAAGTTTTCGATGATCAGAGTTGATC
*
5671 TCCTTTCAAG
131 TCATTTCAAG
* * *
5681 AAGTTTTCGATGATCAGAGTTGATCACATTTTAAGAAGTTTT-GATGATCAGAGTTGATCACATT
1 AAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATT
** * *
5745 TCAAGAAGTTTTCGATGATCAGGGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATC
66 TCAAGAAGTTTTTTATGATCAGAGTTGATCTCCTTTCAAGAAGTTTTCGATGATCAGAGTTGATC
*
5810 TCGTTTCAAG
131 TCATTTCAAG
* * ** *
5820 AAGTTTTCGATGATTAGAGATGATCTCATTTCAAGAAGTTTTTTATGATCAGAGTTGATCTCCTT
1 AAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATT
* ** * * * *
5885 TTAAGAAGATTTCGT-CGATCAGAGTTGATCTCATTTCAAGAAGTTTTTTCTATGGTCAGAGTTG
66 TCAAGAAG-TTTTTTATGATCAGAGTTGATCTCCTTTCAAGAAG--TTTTCGATGATCAGAGTTG
* *
5949 ATATCCTTTCAAG
128 ATCTCATTTCAAG
5962 AAGTTTT
1 AAGTTTT
5969 TTTTTTTTTT
Statistics
Matches: 731, Mismatches: 92, Indels: 70
0.82 0.10 0.08
Matches are distributed among these distances:
135 31 0.04
137 9 0.01
138 55 0.08
139 352 0.48
140 112 0.15
141 20 0.03
142 35 0.05
145 1 0.00
146 1 0.00
147 1 0.00
148 1 0.00
152 5 0.01
154 48 0.07
155 29 0.04
158 31 0.04
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (140 bp):
AAGTTTTCGATGATCAGAGTTGATCTCATTTCAAGAAGTTTTCGATGATCAGAGTTGATCTCATT
TCAAGAAGTTTTTTATGATCAGAGTTGATCTCCTTTCAAGAAGTTTTCGATGATCAGAGTTGATC
TCATTTCAAG
Found at i:5293 original size:35 final size:35
Alignment explanation
Indices: 5252--5968 Score: 968
Period size: 35 Copynumber: 20.6 Consensus size: 35
5242 GATGATCCTG
5252 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* *
5287 TGATCTCATTTCAAGAAGTTTT---TTATCCGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* *
5319 TGATCTCATTCCAAGAAGTTTT-TATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
5353 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
**
5388 TGATCTCATTTCAAGAA-TTTTTAATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* * *
5422 TGTTCTCCTTTCAAGAAGTTTTCGATTATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* * * *
5457 TGATCTCGTTTCAAGAAGTTTTGGTTGATCAAAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
*** *
5492 TGATCTCATTTCAAGAAGTTTTTTTTTTTAT-AGAGT
1 TGATCTCATTTCAAGAAG--TTTTCGATGATCAGAGT
* *
5528 TGATCTCGTTTCAAGAAGTTTT-TATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
*
5562 TGATCTCATTTCAAGAAGTTTT-TATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
*
5596 TGATCTCCTTTCAAGAAGTTTTCGATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
*
5631 TGATCTCATTTCAAGAAGTTTTCGGTGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
*
5666 TGATCTCCTTTCAAGAAGTTTTCGATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* *
5701 TGATCACATTTTAAGAAGTTTT-GATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* *
5735 TGATCACATTTCAAGAAGTTTTCGATGATCAGGGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
5770 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* * *
5805 TGATCTCGTTTCAAGAAGTTTTCGATGATTAGAGA
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
**
5840 TGATCTCATTTCAAGAAGTTTTTTATGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
* * *
5875 TGATCTCCTTTTAAGAAGATTTCG-TCGATCAGAGT
1 TGATCTCATTTCAAGAAGTTTTCGAT-GATCAGAGT
* *
5910 TGATCTCATTTCAAGAAGTTTTTTCTATGGTCAGAGT
1 TGATCTCATTTCAAGAAG--TTTTCGATGATCAGAGT
* *
5947 TGATATCCTTTCAAGAAGTTTT
1 TGATCTCATTTCAAGAAGTTTT
5969 TTTTTTTTTT
Statistics
Matches: 607, Mismatches: 62, Indels: 26
0.87 0.09 0.04
Matches are distributed among these distances:
32 29 0.05
33 4 0.01
34 156 0.26
35 360 0.59
36 21 0.03
37 36 0.06
38 1 0.00
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (35 bp):
TGATCTCATTTCAAGAAGTTTTCGATGATCAGAGT
Done.