Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019015.1 Corchorus olitorius cultivar O-4 contig19048, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3179
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.36


Found at i:3142 original size:68 final size:69

Alignment explanation


    Indices: 2989--3179  Score: 303
    Period size: 68  Copynumber: 2.8  Consensus size: 69

       2979 CAGATCTTGG

                         *       *        *  **                              
       2989 CCAAGTCCTGTCCAGGACTTGGGCTGTTGATGAATGCAAAATTACAGGACAAGACCTGGGCAAGA
          1 CCAAGTCCTGTCCCGGACTTGTGCTGTTGAAGAGCGC-AAATTACAGGACAAGACCTGGGCAAGA

                 
       3054 GTTAC
         65 GTTAC

                                                                         *   
       3059 CCAAGTCCTGTCCCGGACTTGTGCTGTTGAAGAGCGCAAATTACAGGACAAGACCTGGGC-GGAG
          1 CCAAGTCCTGTCCCGGACTTGTGCTGTTGAAGAGCGCAAATTACAGGACAAGACCTGGGCAAGAG

                
       3123 TTAC
         66 TTAC

                                          *                      
       3127 CCAAGTCCTGTCCCGGACTTGTGCTGTTGAGGAGCGCAAATTACAGGACAAGA
          1 CCAAGTCCTGTCCCGGACTTGTGCTGTTGAAGAGCGCAAATTACAGGACAAGA


Statistics
Matches: 114,  Mismatches: 7, Indels: 2
        0.93            0.06        0.02

Matches are distributed among these distances:
  68   59  0.52
  69   23  0.20
  70   32  0.28

ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21


Consensus pattern (69 bp):   
CCAAGTCCTGTCCCGGACTTGTGCTGTTGAAGAGCGCAAATTACAGGACAAGACCTGGGCAAGAG
TTAC
Done.