Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019016.1 Corchorus olitorius cultivar O-4 contig19049, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32996

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10587--10660
35
2.1
35
94
0
130
14
9
29
45
1.77
10600--10690
35
2.7
35
85
8
109
20
12
27
39
1.88
10639--10746
32
3.6
32
71
19
115
29
12
24
33
1.92
10643--10759
56
2.1
56
95
0
207
29
12
24
33
1.93
13118--13331
46
4.7
46
84
4
301
14
25
21
37
1.92
16768--16841
35
2.1
35
92
0
121
13
8
31
47
1.72
16820--16927
32
3.6
32
73
19
124
28
12
25
33
1.93
16824--16941
56
2.1
56
96
0
218
28
12
25
33
1.93
19082--19125
16
2.7
18
76
20
51
6
15
31
45
1.73
19826--19863
18
2.1
19
85
9
53
15
13
26
44
1.83
24947--25488
22
25.0
21
68
16
191
36
16
9
38
1.81
25251--25314
23
2.8
23
78
0
74
35
21
3
39
1.70
25263--25421
82
1.9
84
80
2
187
33
18
6
40
1.78
25620--26016
22
17.9
22
71
14
212
35
15
9
39
1.80
32291--32340
26
1.9
26
87
0
73
54
10
20
16
1.70

Tables:   1

The End!