genome.fa.s19019.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019019.1 Corchorus olitorius cultivar O-4 contig19052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95710

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267--291	13	1.9	13	100	0	50	40	12	8	40	1.72
979--1023	2	22.0	2	88	8	65	46	2	2	48	1.26
983--1026	23	1.9	23	100	0	88	45	4	2	47	1.35
2111--2147	11	3.4	11	100	0	74	67	8	16	8	1.40
2736--2771	18	1.9	18	88	5	54	36	22	2	38	1.69
3441--3520	21	3.5	24	71	25	66	57	2	2	37	1.26
3749--3829	35	2.3	35	85	4	101	32	30	8	28	1.87
11068--11211	38	3.9	37	76	5	139	27	33	17	21	1.96
14291--14360	29	2.4	30	77	17	76	37	24	12	25	1.91
16524--16550	2	13.5	2	100	0	54	51	0	0	48	1.00
17746--17827	32	2.6	32	83	11	98	8	41	39	10	1.71
17819--17937	31	3.7	31	88	5	175	9	36	37	16	1.81
20350--20384	18	2.0	17	88	5	52	34	5	11	48	1.63
21666--21728	23	2.6	24	85	11	78	20	42	20	15	1.89
21810--21877	27	2.6	27	82	13	88	27	44	14	13	1.83
23099--23204	54	2.0	54	88	0	158	31	16	26	25	1.97
27160--27203	17	2.7	17	86	6	56	43	38	13	4	1.65
28167--28210	2	23.0	2	90	9	74	50	0	0	50	1.00
28911--28953	14	2.8	15	82	13	52	48	34	4	11	1.60
31636--31669	7	4.9	7	100	0	68	14	11	14	58	1.63
31720--31750	7	4.4	7	100	0	62	29	0	12	58	1.35
31693--31750	21	2.8	21	72	0	62	27	3	15	53	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32004--32879	37	23.9	37	76	7	712	43	13	18	24	1.86
32062--32790	74	9.9	74	82	5	901	44	13	17	24	1.85
32004--32753	149	5.1	149	88	4	1042	44	13	17	24	1.84
32071--32790	224	3.3	212	83	6	671	44	13	17	24	1.84
32584--32786	72	2.8	72	84	6	255	43	12	20	24	1.86
33628--33796	87	1.9	87	87	0	248	28	23	10	36	1.88
33930--33985	11	5.3	11	74	21	57	1	16	1	80	0.88
33916--33981	19	3.5	18	72	15	53	3	15	3	78	0.99
34692--34732	14	3.0	14	79	13	50	34	9	7	48	1.64
34695--34732	13	2.8	13	85	14	51	34	7	7	50	1.61
39577--39615	20	2.0	20	89	0	60	38	5	2	53	1.37
39635--39709	16	4.7	16	77	6	71	6	12	32	49	1.66
40362--40480	60	2.0	60	84	0	157	34	15	17	32	1.91
40552--40712	60	2.7	58	78	7	162	27	18	16	37	1.92
42948--43110	81	2.0	81	100	0	326	30	3	12	53	1.55
43781--43818	2	19.0	2	100	0	76	50	0	0	50	1.00
47821--47914	33	2.8	33	100	0	188	41	7	0	51	1.30
49335--49415	39	2.1	39	90	4	128	35	13	9	40	1.78
52662--52740	39	2.0	39	87	4	115	35	12	8	43	1.74
52661--52720	21	3.0	20	69	11	52	33	11	10	45	1.74
60322--60354	2	16.5	2	100	0	66	48	0	0	51	1.00
60410--60467	30	2.0	29	86	3	80	37	8	15	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67520--67572	12	4.8	12	79	13	60	56	7	0	35	1.28
67536--67601	20	3.3	20	79	12	66	59	6	1	33	1.31
70113--70253	49	2.9	47	83	11	171	27	14	5	51	1.65
71232--71278	15	3.1	15	81	0	58	44	10	23	21	1.83
81662--81692	2	15.5	2	100	0	62	51	0	0	48	1.00
83233--83267	17	2.1	17	94	0	61	40	0	0	60	0.97
84313--84360	25	2.0	24	88	8	71	10	39	16	33	1.83
85265--85393	65	2.0	64	87	1	186	20	25	30	23	1.99
86521--86560	21	2.0	20	90	5	62	32	10	27	30	1.89
89638--89702	26	2.5	26	94	2	112	21	23	40	15	1.91
91177--91443	136	2.0	136	97	0	507	23	20	22	32	1.97
92329--92359	16	1.9	16	93	0	53	48	3	0	48	1.17
94440--94568	49	2.7	48	86	7	172	25	15	4	54	1.60
95421--95458	9	4.3	9	90	3	60	47	0	18	34	1.49

Tables:   1

The End!