Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019020.1 Corchorus olitorius cultivar O-4 contig19053, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 815

Length: 1359
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34


Found at i:713 original size:49 final size:48

Alignment explanation


    Indices: 648--776  Score: 156
    Period size: 49  Copynumber: 2.7  Consensus size: 48

        638 TACTTTTCAC

                                 **                 *       
        648 TGCACTTTTTCTCAATTTTTACTACAAAATTGAACTTTTATTTTTACT
          1 TGCACTTTTTCTCAATTTTTAAGACAAAATTGAACTTTTAATTTTACT

                                              *               
        696 TGCATCTTTTTCTCAATTTTTAAGACAAAATTGATCTTTTAATTTT-CAT
          1 TGCA-CTTTTTCTCAATTTTTAAGACAAAATTGAACTTTTAATTTTAC-T

                       *          *           
        745 CT-CACTTTTTATCAATTTTT-TGACAAAATTGA
          1 -TGCACTTTTTCTCAATTTTTAAGACAAAATTGA

        777 TTGGCACGCT


Statistics
Matches: 72,  Mismatches: 6, Indels: 7
        0.85            0.07        0.08

Matches are distributed among these distances:
  47   11  0.15
  48   20  0.28
  49   40  0.56
  50    1  0.01

ACGTcount: A:0.29, C:0.16, G:0.05, T:0.50


Consensus pattern (48 bp):   
TGCACTTTTTCTCAATTTTTAAGACAAAATTGAACTTTTAATTTTACT
Done.