genome.fa.s19023.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019023.1 Corchorus olitorius cultivar O-4 contig19056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  190007

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2205--2229	9	2.8	9	100	0	50	36	12	0	52	1.39
5830--5944	57	2.0	57	98	0	221	46	19	13	20	1.82
9571--9604	14	2.3	15	90	5	52	38	20	20	20	1.94
14702--14756	27	2.0	27	100	0	110	36	3	29	30	1.75
19644--19691	24	2.0	24	100	0	96	20	8	8	62	1.49
20267--20314	24	2.0	24	95	0	87	41	0	27	31	1.56
20358--20396	20	2.0	20	84	0	51	30	7	38	23	1.83
26582--26678	48	2.0	48	100	0	194	40	18	4	37	1.70
30760--30799	21	1.9	21	89	0	62	50	0	5	45	1.23
30754--30798	15	3.0	16	81	12	51	53	0	2	44	1.13
30757--30807	24	2.1	24	85	0	66	49	0	5	45	1.26
36212--36241	15	2.0	15	93	0	51	56	26	10	6	1.57
46909--46935	1	27.0	1	100	0	54	0	0	0	100	0.00
52252--52295	22	1.9	24	86	9	65	50	2	11	36	1.51
57252--57295	22	1.9	24	86	9	65	50	2	11	36	1.51
59171--59220	6	8.3	6	95	0	91	68	30	0	2	1.01
59552--59613	27	2.3	27	81	15	67	46	9	0	43	1.36
60255--60281	2	13.5	2	100	0	54	48	0	0	51	1.00
62312--62479	22	7.8	22	75	8	141	39	8	14	36	1.78
62378--62479	43	2.4	43	85	6	127	39	9	12	38	1.77
70619--70647	2	14.5	2	100	0	58	0	0	48	51	1.00
77664--77699	3	12.0	3	93	0	63	2	33	0	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80306--80418	58	1.9	58	98	0	217	14	16	21	47	1.82
83639--83663	11	2.3	11	100	0	50	0	8	0	92	0.40
83937--84130	96	2.0	98	90	2	311	19	20	10	49	1.78
85798--85844	24	2.0	24	82	0	58	14	12	34	38	1.85
87049--87135	16	5.4	16	70	0	75	9	13	37	39	1.77
87059--87135	32	2.4	32	86	0	109	10	14	36	38	1.80
87583--87654	31	2.3	31	75	17	78	61	8	4	26	1.43
90930--90960	13	2.4	13	100	0	62	51	6	0	41	1.27
94654--94760	51	2.1	51	83	0	133	40	5	12	42	1.66
94668--94876	51	4.3	50	73	14	177	33	6	15	44	1.73
94682--94850	92	1.8	93	88	1	259	33	6	15	44	1.72
101221--101259	20	1.9	20	89	5	60	43	15	28	12	1.83
103010--103045	18	2.1	18	89	5	56	44	5	11	38	1.63
103887--103938	11	5.1	10	77	17	54	40	1	19	38	1.63
103898--103933	19	1.9	18	88	5	54	41	0	22	36	1.54
108224--108261	20	1.9	20	94	0	67	36	7	26	28	1.84
116111--116164	22	2.4	22	78	9	56	74	3	12	9	1.20
118351--118390	20	2.0	20	85	4	55	60	2	12	25	1.45
121124--121170	24	2.0	24	87	8	69	44	21	17	17	1.86
131107--131436	178	1.9	178	90	2	529	35	15	13	35	1.87
131104--131481	178	2.1	177	84	4	501	37	14	14	34	1.86
133725--133773	22	2.2	22	100	0	98	30	12	16	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143229--143253	5	5.0	5	100	0	50	20	40	0	40	1.52
147866--147979	58	2.0	58	92	0	192	39	17	10	32	1.84
148497--148564	32	2.1	34	83	5	86	52	25	1	20	1.54
148546--148575	6	5.2	6	92	8	53	83	16	0	0	0.65
164098--164152	2	27.5	2	96	0	101	0	0	47	52	1.00
167392--167477	43	2.0	43	100	0	172	30	6	9	53	1.59
167547--167574	14	2.0	14	100	0	56	42	7	14	35	1.73
168003--168077	39	1.9	39	94	0	132	29	9	5	56	1.53
169346--169384	18	2.2	17	86	13	53	28	5	0	66	1.12
172195--172238	22	2.0	22	100	0	88	27	22	13	36	1.92
173351--173429	38	2.1	38	95	0	140	35	25	10	29	1.88
182023--182137	45	2.6	45	94	0	194	30	20	20	27	1.98
184903--185028	45	2.8	45	97	0	234	33	6	22	38	1.79

Tables:   1

The End!