Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019025.1 Corchorus olitorius cultivar O-4 contig19058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37161

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4918--4949
12
2.7
12
95
0
55
31
15
31
21
1.95
9569--9595
13
2.1
13
100
0
54
18
14
7
59
1.58
11846--12226
178
2.1
177
83
4
482
37
15
13
33
1.87
16243--16388
68
2.1
68
94
0
256
30
19
14
36
1.91
18298--18567
139
1.9
139
87
0
396
36
16
15
31
1.90
22968--23101
67
2.0
67
95
0
241
46
14
8
31
1.73
24015--24062
17
2.8
17
87
6
62
33
20
22
22
1.97
29252--29283
17
1.9
17
93
6
57
3
21
12
62
1.43
29576--29736
79
2.0
81
85
6
220
33
18
16
32
1.93
30643--30684
2
22.0
2
90
9
70
52
0
0
47
1.00

Tables:   1

The End!