Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019026.1 Corchorus olitorius cultivar O-4 contig19059, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1190
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30


Found at i:652 original size:9 final size:9

Alignment explanation


    Indices: 634--662  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

        624 TTAATTCATT

                     
        634 TAATTT-CA
          1 TAATTTCCA

                     
        642 TAATTTCCA
          1 TAATTTCCA

                     
        651 TAATTTCCA
          1 TAATTTCCA

               
        660 TAA
          1 TAA

        663 GTAATTTGGG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
   8    6  0.30
   9   14  0.70

ACGTcount: A:0.38, C:0.17, G:0.00, T:0.45


Consensus pattern (9 bp):   
TAATTTCCA
Done.