Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019028.1 Corchorus olitorius cultivar O-4 contig19061, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9859

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
391--419
9
3.3
9
95
4
51
37
17
0
44
1.49
604--651
18
2.7
18
78
18
55
66
2
2
29
1.14
890--927
16
2.4
16
86
4
60
55
7
0
36
1.29
2995--3035
2
20.5
2
90
9
66
48
0
2
48
1.14
4314--4355
2
22.0
2
85
9
61
54
0
0
45
0.99
4754--4801
20
2.3
20
85
3
60
56
14
4
25
1.56
5468--5507
20
2.0
20
90
5
62
50
25
12
12
1.75
5595--5738
62
2.3
63
92
2
236
40
2
17
40
1.61
6290--6321
2
16.0
2
100
0
64
50
0
0
50
1.00
7576--7620
5
9.6
5
79
13
51
42
4
0
53
1.21
9835--9859
1
25.0
1
100
0
50
0
0
0
100
0.00

Tables:   1

The End!