Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019029.1 Corchorus olitorius cultivar O-4 contig19062, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69769

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6306--6348
21
2.0
21
100
0
86
13
13
23
48
1.79
25766--25990
102
2.2
102
81
6
258
41
11
5
41
1.64
26509--26760
22
11.6
22
71
12
128
35
18
9
36
1.83
26518--26619
46
2.3
44
84
6
125
40
14
8
36
1.77
26922--27088
22
7.6
22
75
7
99
35
14
8
40
1.78
26985--27090
44
2.4
45
81
12
132
35
14
9
40
1.78
26897--27061
88
1.9
88
83
2
215
34
15
9
40
1.80
27174--27265
22
4.2
22
69
15
66
33
19
8
38
1.83
27318--27549
22
10.5
22
73
11
152
37
18
7
37
1.79
27366--27553
66
2.8
65
83
7
218
36
19
7
36
1.80
27716--27753
19
2.0
20
85
15
53
63
2
5
28
1.30
27999--28036
14
2.7
15
88
11
55
50
0
0
50
1.00
31335--31362
2
14.0
2
100
0
56
50
0
0
50
1.00
31716--31846
65
2.0
65
96
0
244
27
16
18
38
1.91
38108--38147
2
20.0
2
100
0
80
50
0
0
50
1.00
41094--41137
2
22.0
2
100
0
88
50
0
0
50
1.00
42214--42238
12
2.1
12
100
0
50
28
8
8
56
1.57
45082--45106
9
2.8
9
100
0
50
48
0
8
44
1.32
52194--52456
130
2.0
131
90
0
411
38
10
1
49
1.48
60178--60239
32
1.9
32
83
0
79
12
35
33
17
1.88
60291--60333
21
2.0
21
90
0
68
11
18
34
34
1.87
62626--62829
105
1.9
106
94
2
365
41
23
12
23
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62744--63046
75
3.8
75
77
17
301
42
23
11
22
1.85
62922--62952
13
2.4
13
94
0
53
41
19
3
35
1.67
62857--63028
86
2.0
84
89
4
211
45
22
9
22
1.81
69662--69714
26
2.0
27
81
3
63
77
3
13
5
1.09

Tables:   1

The End!