Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019031.1 Corchorus olitorius cultivar O-4 contig19064, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6912
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30


Found at i:6369 original size:68 final size:68

Alignment explanation


    Indices: 6260--6392  Score: 266
    Period size: 68  Copynumber: 2.0  Consensus size: 68

       6250 CTATCCTATA

                                                                             
       6260 AAAAAACAACTCAACAGGCATAATCTTTGAGATATAAATTTTTTGTTTAGAATTATCATGGTGCA
          1 AAAAAACAACTCAACAGGCATAATCTTTGAGATATAAATTTTTTGTTTAGAATTATCATGGTGCA

               
       6325 CTG
         66 CTG

                                                                             
       6328 AAAAAACAACTCAACAGGCATAATCTTTGAGATATAAATTTTTTGTTTAGAATTATCATGGTGCA
          1 AAAAAACAACTCAACAGGCATAATCTTTGAGATATAAATTTTTTGTTTAGAATTATCATGGTGCA

       6393 TTACCATACT


Statistics
Matches: 65,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  68   65  1.00

ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34


Consensus pattern (68 bp):   
AAAAAACAACTCAACAGGCATAATCTTTGAGATATAAATTTTTTGTTTAGAATTATCATGGTGCA
CTG
Done.