Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019032.1 Corchorus olitorius cultivar O-4 contig19065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46748

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2630--2711
31
2.7
31
87
9
116
36
14
23
25
1.93
4110--4149
19
2.1
19
100
0
80
42
10
22
25
1.84
4114--4159
19
2.6
18
89
6
67
43
10
19
26
1.84
4564--4599
18
2.0
18
100
0
72
16
16
27
38
1.90
6498--6561
30
2.1
30
94
0
110
42
3
39
15
1.63
6696--6735
19
2.1
19
100
0
80
42
10
22
25
1.84
6700--6745
19
2.6
18
89
6
67
43
10
19
26
1.84
20855--20906
24
2.2
24
96
0
95
15
42
42
0
1.47
26098--26138
21
2.0
21
85
0
55
14
24
53
7
1.66
29055--29148
34
3.0
29
71
21
73
50
9
9
30
1.67
29055--29143
33
2.9
29
71
23
74
48
10
8
32
1.68
29130--29168
20
1.9
20
84
5
51
76
7
15
0
0.99
35356--35394
6
6.5
6
100
0
78
0
15
0
84
0.62
35356--35405
18
2.8
18
90
6
66
2
16
0
82
0.77
43368--43426
27
2.2
27
81
0
64
35
13
20
30
1.91

Tables:   1

The End!