Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019033.1 Corchorus olitorius cultivar O-4 contig19066, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48433

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
634--683
25
2.0
25
92
0
82
42
14
22
22
1.88
1463--1532
29
2.3
30
85
7
97
34
27
10
28
1.89
1780--1901
31
4.0
29
77
14
113
32
13
24
29
1.93
1828--1901
29
2.5
31
84
6
98
31
12
27
29
1.92
2001--2094
45
2.2
44
86
7
131
37
20
5
37
1.75
4103--4148
22
2.0
23
84
12
60
54
13
4
28
1.57
4742--4789
24
2.0
24
91
0
78
35
16
16
31
1.92
6339--6384
2
23.0
2
86
8
67
47
4
0
47
1.21
7400--7438
19
2.0
19
85
5
51
28
2
2
66
1.18
7399--7438
20
2.0
20
85
9
55
27
2
2
67
1.16
7603--8233
22
28.8
22
70
15
219
39
9
16
34
1.82
7605--7902
66
4.5
65
78
10
282
36
8
17
36
1.81
7912--8037
40
3.1
40
79
10
166
44
12
15
26
1.83
7908--8013
20
5.2
20
80
10
135
45
12
15
27
1.81
8273--8595
22
15.0
21
70
17
130
39
8
16
36
1.78
8510--8595
23
3.7
23
96
0
154
37
5
17
39
1.74
8579--8634
21
2.6
21
75
13
60
35
12
12
39
1.81
8791--8837
22
2.1
22
88
0
67
53
2
14
29
1.53
9001--9025
2
12.5
2
100
0
50
48
0
0
52
1.00
10904--10934
15
2.1
14
94
5
53
19
3
0
77
0.90
10992--11034
14
3.1
14
81
15
54
18
4
0
76
0.95
22557--22606
8
6.4
8
82
15
52
38
2
0
60
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26263--26346
42
2.0
42
97
0
159
22
33
20
23
1.97
27358--27387
15
1.9
16
93
6
53
16
3
0
80
0.85
28212--28327
58
2.0
58
96
0
214
22
10
13
53
1.70
28589--28613
11
2.3
11
100
0
50
60
0
0
40
0.97
29562--29620
22
2.7
22
86
5
75
38
6
11
42
1.68
37533--37614
40
2.0
40
97
0
155
47
19
9
23
1.79
41559--41703
49
3.0
48
82
9
179
30
15
4
48
1.66
43195--43501
91
3.6
86
83
9
383
27
14
11
46
1.79
46904--46990
43
2.0
42
95
2
156
32
24
11
32
1.91
46921--46988
20
3.2
20
63
25
50
30
25
13
30
1.93
47886--47934
15
3.3
15
79
0
53
2
32
4
61
1.26

Tables:   1

The End!