Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019036.1 Corchorus olitorius cultivar O-4 contig19069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37041

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
425--502
22
3.5
22
77
8
70
34
16
11
37
1.85
679--773
43
2.2
43
81
3
111
38
12
9
38
1.76
703--801
43
2.3
44
81
8
114
37
12
12
38
1.80
592--884
22
13.3
22
68
16
101
34
18
9
36
1.84
2037--2384
112
3.0
114
90
5
497
33
8
24
34
1.85
2047--2384
119
2.9
118
89
7
496
34
7
23
34
1.84
2569--2778
105
2.0
105
93
0
357
43
7
9
40
1.65
4383--4425
21
2.0
21
95
0
77
27
18
11
41
1.85
6110--6145
18
2.1
18
89
5
56
38
11
5
44
1.63
15894--15947
19
2.9
19
97
2
101
48
9
22
20
1.78
17117--17518
30
13.2
30
85
4
428
31
17
18
32
1.94
23377--23489
19
5.7
21
78
14
100
53
23
6
17
1.66
23377--23489
41
2.9
40
83
10
128
53
23
6
17
1.66
23407--23489
22
4.3
19
80
16
82
55
21
6
16
1.63
29226--29268
22
2.0
22
86
9
61
32
30
6
30
1.84

Tables:   1

The End!