Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019038.1 Corchorus olitorius cultivar O-4 contig19071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18388
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32


Found at i:17285 original size:22 final size:21

Alignment explanation


    Indices: 17234--17285  Score: 52
    Period size: 22  Copynumber: 2.4  Consensus size: 21

      17224 AAACAACAAC

                       *      *  
      17234 AACAACC-AAAGAGAAAATAA
          1 AACAACCAAAACAGAAAAAAA

                 *                 
      17254 AACATCCCAAAACAGAATAAAAA
          1 AACA-ACCAAAACAGAA-AAAAA

                     
      17277 AACAACCAA
          1 AACAACCAA

      17286 GAAATCCAGC


Statistics
Matches: 25,  Mismatches: 4, Indels: 4
        0.76            0.12        0.12

Matches are distributed among these distances:
  20    4  0.16
  21    2  0.08
  22   11  0.44
  23    8  0.32

ACGTcount: A:0.67, C:0.21, G:0.06, T:0.06


Consensus pattern (21 bp):   
AACAACCAAAACAGAAAAAAA
Done.