Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019039.1 Corchorus olitorius cultivar O-4 contig19072, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1876
ACGTcount: A:0.35, C:0.18, G:0.08, T:0.40


Found at i:1538 original size:121 final size:127

Alignment explanation


    Indices: 1393--1642  Score: 377
    Period size: 121  Copynumber: 2.0  Consensus size: 127

       1383 CATTGTTTAA

                   *                                                         
       1393 ACTTTTATAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATAT-CTT-TA-T
          1 ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACT

                             *                                  *         
       1455 A-ATTTTTACCATTTTACTATTTTAATTAAAAAACTTATATAT-T-AGAATTTTTTAAATAT
         66 ATATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTATTTAAATAT

                         * *                                                 
       1514 ACTTTTACAGTTTTATTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACC
          1 ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATA-C

                                                                            
       1579 TATTTTATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTATTTAAAT
         65 TA---TATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTATTTAAAT

       1643 TTATTTCTTA


Statistics
Matches: 114,  Mismatches: 5, Indels: 10
        0.88            0.04        0.08

Matches are distributed among these distances:
 121   53  0.46
 122    3  0.03
 123    2  0.02
 125    2  0.02
 129   40  0.35
 130    1  0.01
 131   13  0.11

ACGTcount: A:0.38, C:0.11, G:0.02, T:0.49


Consensus pattern (127 bp):   
ACTTTTACAGTTTCACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATACT
ATATTTTTACCATTTTAATATTTTAATTAAAAAACTTATATATATAAGAATTATTTAAATAT
Done.