Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019041.1 Corchorus olitorius cultivar O-4 contig19074, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9687
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.31


Found at i:3624 original size:29 final size:29

Alignment explanation


    Indices: 3579--3666  Score: 97
    Period size: 29  Copynumber: 3.0  Consensus size: 29

       3569 TTTTTCTGAT

                        *                
       3579 TTTGTTTAAGTGCGGGTTGTGCACTTGTG
          1 TTTGTTTAAGTGTGGGTTGTGCACTTGTG

                  *             *      * 
       3608 TTTGTTCAAGTGTGGGTTGTACACTTGGG
          1 TTTGTTTAAGTGTGGGTTGTGCACTTGTG

            *       *                 *   
       3637 ATTGTTTTGAGTGTGGGTT-TGCACTCGTG
          1 TTTG-TTTAAGTGTGGGTTGTGCACTTGTG

             
       3666 T
          1 T

       3667 CAAAGCTTTG


Statistics
Matches: 47,  Mismatches: 11, Indels: 2
        0.78            0.18        0.03

Matches are distributed among these distances:
  29   35  0.74
  30   12  0.26

ACGTcount: A:0.11, C:0.10, G:0.34, T:0.44


Consensus pattern (29 bp):   
TTTGTTTAAGTGTGGGTTGTGCACTTGTG
Done.