Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019045.1 Corchorus olitorius cultivar O-4 contig19078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79130

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9357--9444
29
3.0
29
80
3
106
10
10
34
45
1.72
11316--11378
26
2.4
26
97
0
117
11
53
11
23
1.68
12470--12661
72
2.8
72
91
6
303
32
19
8
39
1.83
13741--13790
26
2.0
26
88
4
75
10
14
12
64
1.51
13655--14051
137
2.9
139
98
1
762
21
14
15
48
1.80
13878--13928
26
2.0
26
88
0
75
9
13
11
64
1.49
14001--14041
20
2.0
20
90
0
64
17
12
14
56
1.68
16503--16551
21
2.3
21
96
0
89
22
20
18
38
1.93
18854--18899
23
2.0
23
83
8
58
47
8
8
34
1.65
30860--30938
27
2.9
28
81
14
103
16
15
25
43
1.87
33337--33384
25
1.9
25
87
8
71
12
45
8
33
1.72
39790--39931
76
1.9
72
82
5
176
38
11
19
30
1.88
40726--40797
36
2.2
33
83
16
87
77
9
0
12
0.98
40744--40798
13
3.9
14
73
17
51
80
7
0
12
0.91
40726--40810
14
6.2
13
72
21
50
75
10
1
12
1.11
41383--41557
50
3.5
50
84
0
224
32
20
14
33
1.93
41389--41580
100
1.9
100
81
2
233
32
20
15
32
1.93
42221--42696
50
9.5
50
96
0
844
31
27
13
27
1.94
43169--43244
27
2.8
28
80
11
95
15
15
27
40
1.88
51328--51472
76
2.0
72
84
5
191
36
12
20
30
1.90
51863--51888
7
3.7
7
100
0
52
76
0
11
11
1.01
52268--52352
14
6.2
13
75
20
59
77
8
1
12
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52914--53098
50
3.7
51
84
2
232
34
19
14
31
1.92
53754--54642
50
17.8
50
96
0
1562
31
28
12
28
1.93
54606--54783
69
2.6
69
92
0
302
25
27
15
31
1.95
54966--54991
13
2.0
13
100
0
52
15
23
15
46
1.83
59747--59793
8
6.0
8
82
9
53
72
0
19
8
1.10
59745--59792
15
3.1
15
80
17
53
75
0
18
6
1.01
61406--61442
18
2.1
17
90
5
56
67
8
18
5
1.36
62004--62039
19
1.9
18
88
5
54
27
22
8
41
1.82
62882--62918
18
2.1
18
89
0
56
37
10
5
45
1.62
65396--65443
14
3.2
14
72
16
51
22
10
25
41
1.85

Tables:   1

The End!