Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019049.1 Corchorus olitorius cultivar O-4 contig19082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39481

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
815--878
32
2.0
32
100
0
128
56
15
6
21
1.62
4029--4134
28
3.7
28
70
21
85
50
4
21
22
1.67
4160--4213
15
3.6
15
85
5
74
53
5
16
24
1.64
4160--4229
30
2.3
30
85
4
88
54
4
18
22
1.61
4160--4228
15
4.6
15
85
3
68
55
4
18
21
1.60
4187--4269
28
2.9
28
76
7
78
53
2
25
19
1.57
4194--4347
21
7.6
21
68
20
87
52
4
21
21
1.64
4286--4355
28
2.5
29
83
4
90
55
5
17
21
1.62
4319--4438
60
2.0
60
90
7
194
50
5
15
27
1.67
4593--4643
26
2.0
26
92
0
84
60
1
17
19
1.45
5097--5171
35
2.1
35
97
0
141
22
17
18
41
1.90
5213--5244
16
2.0
16
93
0
55
53
0
0
46
1.00
5197--5249
19
2.8
19
82
8
63
50
0
0
49
1.00
5221--5270
25
1.9
27
88
8
77
54
4
0
42
1.19
5364--5398
18
1.9
18
94
0
61
28
8
11
51
1.67
8885--9067
36
4.9
36
73
15
140
21
35
18
24
1.96
8864--9034
80
2.2
80
94
4
303
19
38
17
25
1.93
8957--9065
34
3.1
34
79
7
112
22
34
18
24
1.96
9243--9296
18
3.2
17
77
12
58
59
7
3
29
1.42
9590--9675
24
3.4
24
73
16
75
47
0
26
25
1.52
10098--10149
2
26.0
2
88
0
77
48
3
1
46
1.31
12107--12165
29
2.0
30
83
12
77
59
8
11
20
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25212--25247
19
1.9
18
88
5
54
30
22
2
44
1.67
25200--25258
11
5.7
10
75
17
50
32
20
5
42
1.74
33239--33271
17
1.9
17
93
0
57
39
21
21
18
1.93
34067--34238
50
3.4
50
94
1
299
25
26
10
37
1.88
34464--34885
64
6.6
64
87
1
515
27
21
14
36
1.93
34899--35019
36
3.3
36
69
15
120
21
26
16
35
1.94
34897--35048
75
2.0
75
100
0
304
23
25
14
36
1.93
34921--35037
37
3.1
37
67
16
114
23
25
14
36
1.93

Tables:   1

The End!