Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019050.1 Corchorus olitorius cultivar O-4 contig19083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23160

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1774--1946
90
1.9
90
97
0
328
28
15
30
26
1.96
2183--2245
32
2.0
32
96
0
117
58
19
9
12
1.61
2548--2598
21
2.5
20
84
9
68
56
9
29
3
1.49
8476--8520
22
2.0
23
87
12
67
60
0
2
37
1.09
11240--11427
94
2.0
94
97
0
358
41
15
11
30
1.83
11569--11597
2
14.5
2
100
0
58
51
0
0
48
1.00
15365--15413
19
2.6
19
83
0
71
26
14
28
30
1.95
17114--17251
37
3.7
37
86
1
195
36
16
16
29
1.91
17218--17330
52
2.2
52
96
0
208
38
12
18
30
1.88
20662--20816
77
2.0
77
98
0
301
16
22
18
42
1.89

Tables:   1

The End!